Strain Fitness in Pseudomonas putida KT2440 around PP_2626

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,001,051	-				+0.5
3,001,083	-				-0.1
3,001,200	+				+0.5
3,001,286	-				-2.1
3,001,338	+				+1.4
3,001,338	+				+0.0
3,001,338	+				+0.7
3,001,339	-				-1.2
3,001,340	+				-0.7
3,001,470	-		PP_2625	0.28	-0.1
3,001,658	+		PP_2625	0.55	-1.1
3,001,658	+		PP_2625	0.55	+1.4
3,001,658	+		PP_2625	0.55	-2.4
3,001,659	-		PP_2625	0.55	+0.3
3,001,659	-		PP_2625	0.55	-0.3
3,001,677	+		PP_2625	0.57	-0.1
3,001,677	+		PP_2625	0.57	+0.8
3,001,677	+		PP_2625	0.57	+1.1
3,001,678	-				-0.5
3,001,740	+		PP_2625	0.67	+0.6
3,001,741	-		PP_2625	0.67	-1.6
3,002,063	-				+0.7
3,002,063	-				+1.4
3,002,153	-		PP_2626	0.13	+1.2
3,002,388	+		PP_2626	0.29	-1.1
3,002,392	+		PP_2626	0.30	-2.5
3,002,392	+		PP_2626	0.30	-0.3
3,002,393	-		PP_2626	0.30	-0.8
3,002,457	-		PP_2626	0.34	-1.2
3,002,498	+		PP_2626	0.37	-0.0
3,002,506	+		PP_2626	0.37	-0.7
3,002,689	+		PP_2626	0.50	-0.6
3,002,773	-		PP_2626	0.56	+0.2
3,002,812	+		PP_2626	0.58	-0.7
3,002,813	-		PP_2626	0.58	-0.3
3,002,987	+		PP_2626	0.70	-0.5
3,002,987	+		PP_2626	0.70	-0.6
3,002,988	-		PP_2626	0.70	-1.2
3,003,162	-		PP_2626	0.82	-1.5
3,003,430	+				+1.1
3,003,430	+				+0.2
3,003,431	-				+0.2
3,003,771	+				+0.7
3,003,820	-		PP_2627	0.11	+0.7
3,003,849	-		PP_2627	0.12	-0.8
3,003,884	+		PP_2627	0.13	+0.0
3,003,885	-		PP_2627	0.13	+0.2
3,004,113	-		PP_2627	0.19	-1.1
3,004,227	+		PP_2627	0.22	-1.4
3,004,227	+		PP_2627	0.22	+0.3
3,004,266	+		PP_2627	0.23	+1.0
3,004,266	+		PP_2627	0.23	+0.7
3,004,314	+		PP_2627	0.25	-0.2
3,004,419	+		PP_2627	0.28	-0.4
3,004,420	-		PP_2627	0.28	+0.7