Strain Fitness in Pseudomonas putida KT2440 around PP_2475

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,821,063	+		PP_2474	0.57	-0.9
2,821,147	-		PP_2474	0.70	-0.7
2,821,252	+		PP_2474	0.87	+0.8
2,821,255	+		PP_2474	0.88	+0.8
2,821,267	-		PP_2474	0.90	+0.1
2,821,326	+				+1.2
2,821,338	+				+0.0
2,821,339	-				-1.4
2,821,347	+				+0.3
2,821,347	+				+0.2
2,821,347	+				-0.7
2,821,348	-				+1.1
2,821,378	+				-1.0
2,821,379	-				+1.6
2,821,427	+				+0.2
2,821,438	-				+0.8
2,821,485	+				+0.8
2,821,485	+				-1.6
2,821,485	+				+1.1
2,821,515	-				+0.3
2,821,633	+				-0.8
2,821,633	+				-1.2
2,821,634	-				-1.3
2,821,634	-				-1.0
2,821,634	-				+0.1
2,821,636	-				-0.6
2,821,636	-				-0.3
2,821,756	+				-0.1
2,821,757	-				-1.2
2,821,757	-				-0.4
2,821,757	-				+0.8
2,821,854	+		PP_2475	0.22	+0.7
2,821,881	+		PP_2475	0.27	-4.2
2,821,882	-		PP_2475	0.27	-1.4
2,821,906	-		PP_2475	0.31	-2.6
2,821,983	+				-1.7
2,821,984	-		PP_2475	0.44	-0.7
2,821,999	+		PP_2475	0.47	-0.6
2,822,007	+		PP_2475	0.48	-0.0
2,822,007	+		PP_2475	0.48	-0.6
2,822,007	+		PP_2475	0.48	-1.8
2,822,007	+				-0.6
2,822,007	+		PP_2475	0.48	-1.7
2,822,062	+		PP_2475	0.57	+0.7
2,822,138	+		PP_2475	0.70	-0.7
2,822,138	+		PP_2475	0.70	-0.6
2,822,206	-		PP_2475	0.81	-1.9
2,822,249	+				-1.3
2,822,249	+		PP_2475	0.89	-2.0
2,822,249	+		PP_2475	0.89	-1.3
2,822,249	+		PP_2475	0.89	-0.1
2,822,249	+		PP_2475	0.89	+0.2
2,822,253	-				-1.0
2,822,253	-		PP_2475	0.89	-0.9
2,822,444	+				-1.6
2,822,566	+		PP_2476	0.13	-0.6
2,822,566	+		PP_2476	0.13	-0.8
2,822,584	+		PP_2476	0.15	+0.2
2,822,584	+		PP_2476	0.15	-0.6
2,822,585	-		PP_2476	0.15	-0.1
2,822,585	-		PP_2476	0.15	-1.8
2,822,617	+		PP_2476	0.18	+1.2
2,822,617	+		PP_2476	0.18	-1.2
2,822,617	+		PP_2476	0.18	+0.1
2,822,618	-		PP_2476	0.18	-0.8
2,822,618	-		PP_2476	0.18	-0.3
2,822,663	+		PP_2476	0.23	+0.7
2,822,663	+		PP_2476	0.23	+1.5
2,822,663	+		PP_2476	0.23	-1.8
2,822,663	+		PP_2476	0.23	-0.6
2,822,663	+		PP_2476	0.23	-0.1
2,822,663	+		PP_2476	0.23	+0.8
2,822,663	+		PP_2476	0.23	+0.7
2,822,663	+		PP_2476	0.23	+0.0
2,822,664	-		PP_2476	0.23	-0.9
2,822,664	-		PP_2476	0.23	-1.2
2,822,664	-		PP_2476	0.23	+1.3
2,822,664	-		PP_2476	0.23	+0.0
2,822,664	-		PP_2476	0.23	-0.4
2,822,664	-		PP_2476	0.23	-0.1
2,822,695	+		PP_2476	0.26	+0.8
2,822,695	+		PP_2476	0.26	-0.6
2,822,695	+				+0.4
2,822,800	+		PP_2476	0.36	+0.9
2,822,800	+		PP_2476	0.36	+1.1
2,822,801	-		PP_2476	0.36	-0.8
2,822,801	-		PP_2476	0.36	-0.2
2,822,801	-		PP_2476	0.36	+0.8
2,822,801	-		PP_2476	0.36	+0.9
2,822,801	-		PP_2476	0.36	+1.0
2,822,839	+		PP_2476	0.40	-1.1
2,822,839	+				+0.0
2,822,839	+		PP_2476	0.40	-1.4
2,822,839	+		PP_2476	0.40	+2.2
2,822,839	+		PP_2476	0.40	-1.3
2,822,839	+		PP_2476	0.40	+0.0
2,822,839	+		PP_2476	0.40	-1.1
2,822,839	+		PP_2476	0.40	-0.7
2,822,839	+		PP_2476	0.40	-0.9
2,822,840	-		PP_2476	0.40	-0.1
2,822,840	-		PP_2476	0.40	+1.2
2,822,840	-		PP_2476	0.40	-0.2
2,822,841	+		PP_2476	0.40	+0.8
2,823,027	-		PP_2476	0.58	-1.1
2,823,092	-		PP_2476	0.64	-0.8
2,823,092	-		PP_2476	0.64	-0.4
2,823,144	+		PP_2476	0.69	-0.5