Strain Fitness in Pseudomonas putida KT2440 around PP_2402

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,745,949	-		PP_2401	0.41	-0.4
2,746,026	+		PP_2401	0.54	+0.0
2,746,026	+		PP_2401	0.54	+0.7
2,746,027	-		PP_2401	0.54	-3.3
2,746,077	+		PP_2401	0.62	+1.1
2,746,077	+		PP_2401	0.62	+0.3
2,746,077	+		PP_2401	0.62	-0.1
2,746,078	-		PP_2401	0.62	-0.2
2,746,175	-		PP_2401	0.78	-0.5
2,746,235	+		PP_2401	0.87	-0.3
2,746,236	-		PP_2401	0.88	-1.1
2,746,236	-		PP_2401	0.88	-0.0
2,746,363	+				+0.1
2,746,364	-				-0.1
2,746,395	+				-2.5
2,746,396	-				+0.1
2,746,396	-				-0.9
2,746,396	-				-0.7
2,746,396	-				-0.0
2,746,396	-				+0.2
2,746,706	+		PP_2402	0.17	-1.5
2,746,706	+				-2.0
2,746,707	-		PP_2402	0.17	-2.2
2,746,707	-		PP_2402	0.17	-3.1
2,746,870	-		PP_2402	0.30	+0.3
2,746,943	-		PP_2402	0.36	-1.6
2,747,274	-		PP_2402	0.62	-2.5
2,747,274	-		PP_2402	0.62	-0.2
2,747,663	+				-3.7
2,747,664	-				-2.6
2,747,664	-				+0.5
2,747,664	-				+0.1
2,747,701	+				-1.3
2,747,702	-				-0.8
2,747,809	-				+0.4
2,747,939	-		PP_2403	0.23	+0.3
2,748,198	+		PP_2403	0.58	-0.9
2,748,543	+				+0.6
2,748,544	-				+1.4
2,748,579	-				-0.2
2,748,588	+				-1.3
2,748,588	+				-0.8
2,748,608	-				+0.5
2,748,650	+				-0.9
2,748,651	-				+1.3
2,748,740	+				-2.8