Strain Fitness in Pseudomonas putida KT2440 around PP_2397

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,742,059	-				-0.1
2,742,059	-				+0.5
2,742,108	+				-0.7
2,742,108	+				+0.5
2,742,108	+				+0.2
2,742,109	-				+0.3
2,742,109	-				-1.2
2,742,109	-				-1.0
2,742,109	-				+0.6
2,742,109	-				-0.3
2,742,130	-				+0.6
2,742,166	+				+0.5
2,742,166	+				+0.6
2,742,167	-				-0.2
2,742,167	-				+0.1
2,742,205	+				+0.2
2,742,206	-				+0.1
2,742,240	+				-0.2
2,742,246	+				+0.8
2,742,339	+				+0.0
2,742,339	+				-0.8
2,742,339	+				+0.6
2,742,339	+				+0.1
2,742,339	+				+0.4
2,742,340	-				-0.5
2,742,340	-				-0.1
2,742,340	-				+0.2
2,742,340	-				+0.4
2,742,340	-				-0.7
2,742,424	-		PP_2396	0.19	+0.2
2,742,560	+		PP_2396	0.42	-0.9
2,742,661	+		PP_2396	0.60	+0.0
2,742,662	-		PP_2396	0.60	-0.1
2,742,662	-		PP_2396	0.60	+0.4
2,742,808	-		PP_2396	0.85	-0.5
2,742,946	+				+0.5
2,742,947	-				-2.1
2,742,947	-				+0.2
2,742,957	-				+0.5
2,742,957	-				+0.1
2,742,977	+		PP_2397	0.11	-0.0
2,742,977	+		PP_2397	0.11	-2.5
2,742,977	+		PP_2397	0.11	+0.3
2,742,978	-		PP_2397	0.11	-2.0
2,743,008	-		PP_2397	0.16	+0.4
2,743,008	-		PP_2397	0.16	-2.1
2,743,033	+		PP_2397	0.19	-0.4
2,743,034	-		PP_2397	0.20	-0.7
2,743,276	+		PP_2397	0.56	-2.5
2,743,567	+				-0.8
2,743,567	+				+0.1
2,743,568	-				+0.5
2,743,664	+				+0.7
2,743,665	-				+0.2
2,743,769	-		PP_2398	0.16	+0.5
2,743,931	-		PP_2398	0.35	+0.8
2,743,931	-		PP_2398	0.35	+0.7
2,743,931	-		PP_2398	0.35	+0.6
2,743,954	+		PP_2398	0.38	-0.4
2,743,992	-		PP_2398	0.43	+0.9
2,744,066	-		PP_2398	0.52	-0.2
2,744,066	-		PP_2398	0.52	-2.5
2,744,066	-		PP_2398	0.52	+1.3
2,744,066	-		PP_2398	0.52	-1.0
2,744,068	+		PP_2398	0.52	-1.7
2,744,068	+		PP_2398	0.52	+0.4
2,744,068	+		PP_2398	0.52	+0.1
2,744,069	-		PP_2398	0.52	+0.8
2,744,080	+		PP_2398	0.53	+1.3
2,744,164	+		PP_2398	0.63	+0.3
2,744,165	-		PP_2398	0.63	-0.3
2,744,165	-		PP_2398	0.63	+0.1
2,744,188	+		PP_2398	0.66	+0.9
2,744,189	-		PP_2398	0.66	+0.8
2,744,257	+		PP_2398	0.74	-0.2
2,744,355	-		PP_2398	0.86	+0.7
2,744,386	+				+0.2
2,744,387	-				-0.2
2,744,387	-				+0.2
2,744,425	-				-1.2
2,744,489	+				-0.6
2,744,489	+				-0.4
2,744,489	+				+0.2
2,744,490	-				+0.4
2,744,490	-				-0.2
2,744,490	-				-0.1