Strain Fitness in Pseudomonas putida KT2440 around PP_2370

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,706,167	-		PP_2369	0.79	-0.1
2,706,311	-				+0.2
2,706,328	-		PP_2369	0.83	-0.7
2,706,328	-		PP_2369	0.83	+0.0
2,706,368	+		PP_2369	0.84	-3.0
2,706,368	+		PP_2369	0.84	+1.1
2,706,400	+				+0.3
2,706,400	+		PP_2369	0.85	-0.0
2,706,524	-		PP_2369	0.88	-0.5
2,706,613	-				-0.2
2,706,668	+				+0.4
2,706,668	+				+0.4
2,706,668	+				-0.1
2,706,669	-				-0.3
2,706,825	+				+0.2
2,706,825	+				-0.7
2,706,826	-				+0.4
2,706,930	+				-1.4
2,706,931	-				-1.9
2,706,950	+				+0.7
2,707,125	-				+1.1
2,707,125	-				+0.0
2,707,304	+		PP_2370	0.46	-0.8
2,707,405	+		PP_2370	0.66	-2.0
2,707,405	+		PP_2370	0.66	-2.2
2,707,406	-		PP_2370	0.66	-0.2
2,707,406	-		PP_2370	0.66	-1.5
2,707,476	-		PP_2370	0.80	-2.5
2,707,557	+				-2.2
2,707,572	+				-2.2
2,707,572	+				-0.3
2,707,573	-				-0.6
2,707,604	-				-0.7
2,707,611	+				-1.7
2,707,611	+				-4.1
2,707,611	+				-2.3
2,707,612	-				-3.0
2,707,640	-				-3.2
2,707,768	-		PP_2371	0.13	+0.1
2,707,768	-		PP_2371	0.13	-3.9
2,707,884	+		PP_2371	0.20	-0.1
2,707,885	-		PP_2371	0.20	-2.8
2,707,885	-		PP_2371	0.20	-1.9
2,707,885	-		PP_2371	0.20	-1.9
2,708,118	+		PP_2371	0.34	-0.8
2,708,118	+		PP_2371	0.34	-2.7
2,708,316	+		PP_2371	0.46	-3.6
2,708,470	-		PP_2371	0.55	-0.2
2,708,470	-		PP_2371	0.55	-1.4