Strain Fitness in Pseudomonas putida KT2440 around PP_2328

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,654,801	+		PP_2327	0.50	-0.3
2,654,801	+		PP_2327	0.50	-2.7
2,654,801	+		PP_2327	0.50	-0.5
2,654,801	+		PP_2327	0.50	-3.4
2,654,801	+		PP_2327	0.50	-0.3
2,654,802	-		PP_2327	0.50	+0.2
2,654,900	+		PP_2327	0.60	-0.4
2,654,900	+		PP_2327	0.60	-1.0
2,654,900	+		PP_2327	0.60	-1.5
2,654,901	-		PP_2327	0.60	+0.7
2,654,901	-		PP_2327	0.60	+0.4
2,655,008	+		PP_2327	0.71	+1.3
2,655,008	+		PP_2327	0.71	-2.4
2,655,008	+		PP_2327	0.71	+1.1
2,655,008	+		PP_2327	0.71	-1.1
2,655,008	+		PP_2327	0.71	+0.4
2,655,009	-		PP_2327	0.71	+1.0
2,655,009	-		PP_2327	0.71	+0.6
2,655,315	+				-0.0
2,655,436	+				+0.4
2,655,436	+				-1.0
2,655,452	+				+0.4
2,655,453	-				+0.1
2,655,639	-		PP_2328	0.25	-1.9
2,655,639	-		PP_2328	0.25	+1.0
2,655,639	-		PP_2328	0.25	-1.7
2,655,639	-		PP_2328	0.25	-2.8
2,655,640	+		PP_2328	0.25	+0.1
2,655,640	+		PP_2328	0.25	-0.2
2,655,641	-		PP_2328	0.25	-1.6
2,655,641	-		PP_2328	0.25	+0.8
2,655,641	-		PP_2328	0.25	-1.3
2,655,641	-		PP_2328	0.25	-0.1
2,655,641	-		PP_2328	0.25	-2.4
2,655,641	-		PP_2328	0.25	-1.8
2,655,641	-		PP_2328	0.25	-0.6
2,655,648	+		PP_2328	0.26	-2.2
2,655,688	+		PP_2328	0.32	-1.1
2,655,688	+		PP_2328	0.32	-2.9
2,655,688	+		PP_2328	0.32	+0.8
2,655,689	-		PP_2328	0.32	-2.9
2,656,014	+		PP_2328	0.76	-1.5
2,656,015	-		PP_2328	0.76	+1.0
2,656,021	-		PP_2328	0.77	-1.2
2,656,021	-		PP_2328	0.77	-0.6
2,656,150	+				+0.8
2,656,150	+				-0.0
2,656,151	-				-3.4
2,656,151	-				-2.3
2,656,229	+				-2.4
2,656,230	-				-0.8
2,656,232	+				+1.3
2,656,233	-				-0.1
2,656,233	-				-0.7
2,656,244	-				+0.9
2,656,262	+				+0.8
2,656,449	+		PP_2329	0.13	+0.2
2,656,449	+		PP_2329	0.13	-0.1
2,656,449	+		PP_2329	0.13	-0.3
2,656,450	-		PP_2329	0.13	-2.7
2,656,450	-		PP_2329	0.13	-0.3
2,656,450	-		PP_2329	0.13	-0.3
2,656,450	-		PP_2329	0.13	+0.3
2,656,772	-		PP_2329	0.37	-0.8
2,656,886	-		PP_2329	0.46	+0.1
2,657,031	+		PP_2329	0.57	-0.5
2,657,031	+		PP_2329	0.57	+0.2
2,657,031	+		PP_2329	0.57	+0.2
2,657,032	-		PP_2329	0.57	+0.2
2,657,040	-		PP_2329	0.57	-0.3
2,657,040	-		PP_2329	0.57	-0.3
2,657,062	-		PP_2329	0.59	-0.0
2,657,177	-		PP_2329	0.68	-0.5