Strain Fitness in Pseudomonas putida KT2440 around PP_2144

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,445,156	-		PP_2143	0.42	-1.0
2,445,169	-		PP_2143	0.44	-2.1
2,445,549	-				+0.8
2,445,682	+				+1.9
2,445,713	+				-0.1
2,445,723	-				-0.1
2,445,819	+		PP_2144	0.13	-0.6
2,445,819	+		PP_2144	0.13	-1.4
2,446,005	-		PP_2144	0.39	-1.6
2,446,005	-		PP_2144	0.39	-0.5
2,446,109	-		PP_2144	0.54	-0.5
2,446,123	+		PP_2144	0.56	-1.9
2,446,123	+		PP_2144	0.56	-0.8
2,446,123	+				-2.0
2,446,124	-		PP_2144	0.56	-1.6
2,446,124	-		PP_2144	0.56	-2.6
2,446,124	-		PP_2144	0.56	+0.6
2,446,124	-		PP_2144	0.56	-2.3
2,446,124	-		PP_2144	0.56	-1.8
2,446,144	+		PP_2144	0.59	-1.1
2,446,523	+				-0.2
2,446,524	-				+0.4
2,446,524	-				-2.3
2,446,657	-				-0.1
2,446,657	-				+0.7
2,446,732	-		PP_2145	0.12	-1.8
2,446,826	+		PP_2145	0.21	-1.1
2,446,827	-		PP_2145	0.21	-2.1
2,447,257	+		PP_2145	0.64	-0.9
2,447,258	-		PP_2145	0.64	-1.5
2,447,258	-		PP_2145	0.64	-1.0
2,447,258	-		PP_2145	0.64	-0.3
2,447,258	-		PP_2145	0.64	+0.8
2,447,434	-		PP_2145	0.81	-0.1