Strain Fitness in Pseudomonas putida KT2440 around PP_2073

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,357,409	+				+0.1
2,357,409	+				+0.1
2,357,436	+				+0.7
2,357,437	-				-1.3
2,357,519	+				+0.3
2,357,536	-				-0.4
2,357,682	+		PP_2072	0.24	-0.3
2,357,683	-		PP_2072	0.24	+1.1
2,357,753	+		PP_2072	0.32	+0.8
2,357,753	+		PP_2072	0.32	+0.4
2,357,753	+		PP_2072	0.32	+0.2
2,357,754	-		PP_2072	0.32	+0.4
2,357,809	-		PP_2072	0.39	+1.0
2,357,809	-		PP_2072	0.39	-0.2
2,357,871	+		PP_2072	0.47	-0.8
2,357,871	+		PP_2072	0.47	+1.7
2,357,871	+		PP_2072	0.47	-0.4
2,357,872	-		PP_2072	0.47	+0.4
2,357,921	+		PP_2072	0.53	+0.8
2,357,944	-		PP_2072	0.56	+0.1
2,358,030	+		PP_2072	0.66	+0.4
2,358,141	+		PP_2072	0.79	-0.4
2,358,141	+		PP_2072	0.79	-1.5
2,358,141	+		PP_2072	0.79	+0.9
2,358,141	+		PP_2072	0.79	+0.8
2,358,142	-		PP_2072	0.80	+0.4
2,358,170	-		PP_2072	0.83	+0.0
2,358,183	+		PP_2072	0.84	-0.3
2,358,184	-		PP_2072	0.85	-0.7
2,358,187	+		PP_2072	0.85	-2.0
2,358,188	-		PP_2072	0.85	-0.3
2,358,188	-				+0.6
2,358,262	+				-1.1
2,358,263	-				+0.2
2,358,418	+		PP_2073	0.17	-3.5
2,358,418	+		PP_2073	0.17	-0.5
2,358,609	+		PP_2073	0.54	-0.4
2,358,790	+		PP_2073	0.89	-0.7
2,358,791	-		PP_2073	0.89	-3.4
2,358,936	-				-3.9
2,358,957	-				-1.4
2,359,265	+		PP_2074	0.24	+0.9
2,359,266	-		PP_2074	0.24	-0.1
2,359,454	+		PP_2074	0.44	+1.2
2,359,501	+		PP_2074	0.50	-1.2
2,359,548	+		PP_2074	0.55	-0.4
2,359,549	-		PP_2074	0.55	-0.3
2,359,549	-		PP_2074	0.55	-0.5
2,359,570	-				+3.1
2,359,785	-		PP_2074	0.80	+0.4