Strain Fitness in Pseudomonas putida KT2440 around PP_1985

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,249,723	-				+0.1
2,249,723	-				+0.4
2,249,723	-				+0.8
2,249,723	-				+1.4
2,249,742	+				-0.4
2,249,743	-				+0.1
2,249,743	-				+0.3
2,249,743	-				+1.4
2,249,748	-		PP_1984	0.10	-0.5
2,249,748	-		PP_1984	0.10	-0.0
2,249,765	+		PP_1984	0.12	+0.2
2,249,765	+		PP_1984	0.12	-0.2
2,249,766	-		PP_1984	0.12	-0.7
2,249,868	+		PP_1984	0.24	-1.1
2,249,868	+		PP_1984	0.24	-1.8
2,249,869	-		PP_1984	0.24	-0.8
2,249,929	+		PP_1984	0.31	-0.4
2,249,929	+		PP_1984	0.31	+0.6
2,249,929	+		PP_1984	0.31	+0.6
2,249,929	+		PP_1984	0.31	-0.4
2,249,929	+		PP_1984	0.31	+0.5
2,249,930	-		PP_1984	0.31	-0.5
2,249,930	-		PP_1984	0.31	+0.9
2,249,930	-		PP_1984	0.31	+0.9
2,249,930	-		PP_1984	0.31	+0.2
2,250,179	+		PP_1984	0.59	+0.4
2,250,180	-		PP_1984	0.59	+1.2
2,250,180	-		PP_1984	0.59	+0.2
2,250,307	+		PP_1984	0.74	+0.6
2,250,334	-		PP_1984	0.77	+2.0
2,250,608	-				+0.8
2,250,619	+				-0.5
2,250,620	-				-0.2
2,250,642	+				+0.4
2,250,643	-				+1.2
2,250,643	-				-0.1
2,250,689	-				+0.9
2,250,689	-				+1.2
2,250,689	-				-0.3
2,250,749	-				-2.9
2,250,961	+		PP_1985	0.20	-0.5
2,250,994	+		PP_1985	0.23	-0.9
2,251,230	+		PP_1985	0.39	-0.0
2,251,398	+		PP_1985	0.51	-0.8
2,251,409	-		PP_1985	0.52	-0.0
2,251,427	-		PP_1985	0.53	-0.1
2,251,657	+		PP_1985	0.69	-1.1
2,251,657	+		PP_1985	0.69	-0.9
2,251,658	-		PP_1985	0.69	-1.0
2,252,241	+		PP_1986	0.22	+1.1
2,252,242	-		PP_1986	0.22	+0.7
2,252,263	-		PP_1986	0.25	+1.4
2,252,320	-		PP_1986	0.34	-0.2
2,252,403	+		PP_1986	0.47	-1.1
2,252,780	-				-0.3
2,252,784	-				-1.0
2,253,076	+		PP_1987	0.28	-0.7