Strain Fitness in Pseudomonas putida KT2440 around PP_1790

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,005,742	+				+0.1
2,005,924	-				+0.5
2,006,355	+		PP_1789	0.54	+0.9
2,006,368	-		PP_1789	0.56	+0.9
2,006,368	-		PP_1789	0.56	-0.1
2,006,369	+		PP_1789	0.56	-0.1
2,006,369	+		PP_1789	0.56	+0.2
2,006,407	+		PP_1789	0.62	+0.5
2,006,427	+		PP_1789	0.64	-0.7
2,006,457	+		PP_1789	0.69	+0.4
2,006,569	+		PP_1789	0.85	+0.5
2,006,591	+		PP_1789	0.88	-1.3
2,006,793	-		PP_1790	0.18	-1.9
2,006,806	+		PP_1790	0.20	-0.7
2,006,838	-		PP_1790	0.25	-0.2
2,007,207	-		PP_1790	0.78	-0.4
2,007,390	+				+0.5
2,007,398	+				+0.0
2,007,531	+		PP_1791	0.11	+0.4
2,007,563	+		PP_1791	0.13	-0.2
2,007,564	-		PP_1791	0.13	+1.6
2,007,569	-				-0.7
2,007,574	+		PP_1791	0.13	-1.0
2,007,657	+		PP_1791	0.19	-0.1
2,007,699	-		PP_1791	0.21	-0.1
2,007,705	+		PP_1791	0.22	-1.3
2,007,772	+		PP_1791	0.26	+1.7
2,007,772	+		PP_1791	0.26	-0.0
2,007,772	+		PP_1791	0.26	-0.9
2,007,773	-		PP_1791	0.26	-0.7
2,007,773	-		PP_1791	0.26	+0.3
2,007,837	+		PP_1791	0.30	+1.0
2,007,895	-		PP_1791	0.33	-0.4
2,007,895	-		PP_1791	0.33	+0.7
2,007,898	+		PP_1791	0.34	+1.2
2,007,898	+		PP_1791	0.34	-0.0
2,007,907	+		PP_1791	0.34	-1.1
2,007,907	+		PP_1791	0.34	+0.6
2,007,908	-		PP_1791	0.34	+1.1
2,007,965	+		PP_1791	0.38	+0.3
2,007,991	-		PP_1791	0.39	+0.5
2,007,994	+		PP_1791	0.40	+0.6
2,007,995	-		PP_1791	0.40	+0.2
2,008,091	+		PP_1791	0.46	-1.1
2,008,091	+		PP_1791	0.46	+0.1
2,008,124	+		PP_1791	0.48	+0.5
2,008,125	-		PP_1791	0.48	-2.1
2,008,127	+		PP_1791	0.48	-0.6
2,008,127	+				-1.3
2,008,127	+		PP_1791	0.48	-0.0
2,008,131	-		PP_1791	0.48	+0.6
2,008,156	-		PP_1791	0.50	+0.2
2,008,296	+		PP_1791	0.58	-0.9
2,008,296	+		PP_1791	0.58	+1.0
2,008,338	+		PP_1791	0.61	-0.3
2,008,338	+		PP_1791	0.61	+0.3