Strain Fitness in Pseudomonas putida KT2440 around PP_1733

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,932,016	+		PP_1731	0.19	-2.5
1,932,134	+		PP_1731	0.37	+0.4
1,932,135	-		PP_1731	0.37	-2.1
1,932,135	-		PP_1731	0.37	-0.9
1,932,205	+		PP_1731	0.48	-1.1
1,932,206	-		PP_1731	0.48	-1.7
1,932,268	+		PP_1731	0.58	+0.1
1,932,268	+		PP_1731	0.58	-1.6
1,932,269	-		PP_1731	0.58	+0.3
1,932,269	-		PP_1731	0.58	-1.7
1,932,551	+				-0.1
1,932,552	-				-0.4
1,932,552	-				+0.2
1,932,552	-				-0.0
1,932,552	-				-2.4
1,932,603	+				-0.2
1,932,612	+				-0.0
1,932,613	-				+1.6
1,932,625	+				-0.8
1,933,042	-		PP_1733	0.12	-2.5
1,933,042	-		PP_1733	0.12	-0.4
1,933,307	+		PP_1733	0.45	-3.2
1,933,357	-		PP_1733	0.51	-0.5
1,933,410	+		PP_1733	0.58	-0.6
1,933,411	-		PP_1733	0.58	-1.7
1,933,503	+		PP_1733	0.69	-2.7
1,933,503	+		PP_1733	0.69	-1.5
1,933,503	+		PP_1733	0.69	-1.9
1,933,504	-		PP_1733	0.69	-0.2
1,933,504	-				-2.0
1,933,581	+		PP_1733	0.79	+0.3
1,933,699	+				-1.2
1,933,700	-				-2.3
1,933,700	-				-3.2
1,933,733	-				-1.3
1,933,733	-				-1.8
1,933,774	-				-1.2
1,933,812	-				+0.5
1,933,812	-				-0.2
1,933,815	+				-0.2
1,933,815	+				-1.6
1,933,816	-				-0.4
1,933,828	-				+1.3
1,933,858	-				-0.7
1,934,006	+				-0.4
1,934,007	-		PP_1734	0.17	-2.0
1,934,063	-		PP_1734	0.24	-2.4
1,934,143	+		PP_1734	0.34	+0.2
1,934,143	+		PP_1734	0.34	-2.1
1,934,143	+		PP_1734	0.34	-2.0
1,934,144	-		PP_1734	0.34	-2.6
1,934,144	-		PP_1734	0.34	-1.3
1,934,144	-				+0.1
1,934,144	-		PP_1734	0.34	-0.9
1,934,174	+		PP_1734	0.38	-1.4
1,934,174	+		PP_1734	0.38	-2.7
1,934,460	-		PP_1734	0.72	-3.0
1,934,460	-		PP_1734	0.72	-1.0
1,934,460	-		PP_1734	0.72	-1.9
1,934,549	+		PP_1734	0.83	-1.0
1,934,549	+		PP_1734	0.83	-0.5
1,934,550	-		PP_1734	0.83	-1.2
1,934,624	+				-2.5
1,934,625	-				-2.9
1,934,625	-				+0.8
1,934,657	+				-1.6
1,934,657	+				-1.9
1,934,658	-				+0.7
1,934,658	-				+0.7
1,934,660	-				-1.3
1,934,660	-				-1.0