Strain Fitness in Pseudomonas putida KT2440 around PP_1635

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,831,259	+		PP_1634	0.19	+0.1
1,831,259	+		PP_1634	0.19	-0.0
1,831,260	-		PP_1634	0.19	+0.3
1,831,437	+		PP_1634	0.44	+0.2
1,831,437	+		PP_1634	0.44	-0.2
1,831,437	+		PP_1634	0.44	-0.2
1,831,438	-		PP_1634	0.44	-1.2
1,831,438	-				+0.8
1,831,438	-		PP_1634	0.44	+0.4
1,831,438	-		PP_1634	0.44	-0.0
1,831,440	-		PP_1634	0.45	+0.1
1,831,440	-		PP_1634	0.45	-0.1
1,831,576	-		PP_1634	0.64	+0.7
1,831,735	-		PP_1634	0.86	+0.7
1,831,758	+		PP_1634	0.89	-0.2
1,831,758	+		PP_1634	0.89	-0.1
1,831,758	+		PP_1634	0.89	-1.4
1,831,758	+		PP_1634	0.89	+1.1
1,831,758	+		PP_1634	0.89	+0.1
1,831,759	-		PP_1634	0.90	-0.6
1,831,759	-		PP_1634	0.90	-0.8
1,831,759	-		PP_1634	0.90	+0.1
1,831,828	+				-1.2
1,831,828	+				-0.7
1,831,828	+				-3.0
1,831,828	+				-0.6
1,831,828	+				+1.2
1,831,829	-				+0.5
1,831,829	-				+0.0
1,831,830	+				+0.1
1,831,830	+				+0.6
1,831,831	-				+0.5
1,831,831	-				+0.5
1,831,863	+				-0.9
1,831,863	+				+0.4
1,831,864	-				+0.0
1,831,864	-				+0.3
1,832,005	+				-0.8
1,832,005	+				+0.0
1,832,005	+				-0.2
1,832,377	-		PP_1635	0.56	-0.1
1,832,534	+		PP_1635	0.80	-1.2
1,832,574	+		PP_1635	0.86	-0.7
1,833,161	+				+0.4
1,833,161	+				+0.4
1,833,161	+				-2.9
1,833,162	-				+1.8
1,833,195	+		PP_1637	0.10	-0.7
1,833,196	-		PP_1637	0.11	-0.1
1,833,196	-		PP_1637	0.11	+0.6
1,833,261	-		PP_1637	0.18	+0.3
1,833,376	+				+1.4
1,833,608	+		PP_1637	0.55	-0.7