Strain Fitness in Pseudomonas putida KT2440 around PP_1486

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,688,712	+		PP_1484	0.20	-0.9
1,688,713	-		PP_1484	0.20	+1.1
1,688,713	-		PP_1484	0.20	-1.8
1,688,713	-		PP_1484	0.20	+1.3
1,688,713	-		PP_1484	0.20	-0.7
1,688,869	+		PP_1484	0.35	-3.3
1,688,870	-		PP_1484	0.35	-0.1
1,688,870	-		PP_1484	0.35	-0.8
1,688,870	-		PP_1484	0.35	+0.9
1,688,870	-		PP_1484	0.35	+0.5
1,688,870	-		PP_1484	0.35	-1.1
1,689,158	-		PP_1484	0.63	+0.0
1,689,229	-		PP_1484	0.70	+0.1
1,689,241	+		PP_1484	0.71	-0.7
1,689,283	+		PP_1484	0.75	+0.6
1,689,283	+		PP_1484	0.75	-0.1
1,689,283	+		PP_1484	0.75	-1.6
1,689,284	-		PP_1484	0.75	+0.7
1,689,284	-		PP_1484	0.75	-0.9
1,689,599	-				+1.0
1,689,710	+				-0.6
1,689,710	+				-1.5
1,689,711	-				-0.9
1,689,711	-				+1.7
1,689,711	-				-0.7
1,689,731	+				-0.8
1,689,932	+		PP_1486	0.22	-1.6
1,689,933	-		PP_1486	0.22	+1.6
1,690,055	+		PP_1486	0.32	+0.5
1,690,178	+		PP_1486	0.43	-0.2
1,690,178	+		PP_1486	0.43	-1.3
1,690,178	+		PP_1486	0.43	-0.5
1,690,178	+		PP_1486	0.43	-0.4
1,690,178	+				-0.5
1,690,178	+		PP_1486	0.43	-0.8
1,690,179	-		PP_1486	0.43	-0.1
1,690,179	-		PP_1486	0.43	-1.4
1,690,179	-		PP_1486	0.43	+1.0
1,690,179	-		PP_1486	0.43	+1.0
1,690,242	-		PP_1486	0.49	+0.1
1,690,242	-		PP_1486	0.49	-0.1
1,690,262	+		PP_1486	0.50	-1.8
1,690,263	-		PP_1486	0.50	+0.0
1,690,263	-		PP_1486	0.50	-0.6
1,690,263	-		PP_1486	0.50	-1.6
1,690,263	-				-0.5
1,690,419	-		PP_1486	0.64	-1.0
1,690,439	+		PP_1486	0.66	-0.7
1,690,440	-		PP_1486	0.66	-0.8
1,690,440	-		PP_1486	0.66	-1.1
1,690,440	-		PP_1486	0.66	-0.0
1,690,446	+		PP_1486	0.66	-0.7
1,690,446	+		PP_1486	0.66	+0.1
1,690,446	+		PP_1486	0.66	+0.2
1,690,447	-		PP_1486	0.66	-3.1
1,690,510	+		PP_1486	0.72	-1.7
1,690,670	+		PP_1486	0.86	-0.3
1,690,670	+		PP_1486	0.86	-0.4
1,690,671	-		PP_1486	0.86	-1.8
1,690,671	-		PP_1486	0.86	+0.6
1,690,701	-		PP_1486	0.89	-0.1
1,690,899	+				+0.4
1,690,900	-				+0.6
1,690,902	-				-0.2
1,690,907	+				+0.2
1,690,908	-				-1.1
1,690,925	+				+0.0
1,690,943	+				+0.4
1,690,944	-				+0.6
1,690,944	-				-0.5
1,691,036	+				+0.4
1,691,036	+				+0.1
1,691,036	+				-0.6
1,691,037	-				+1.0
1,691,239	+		PP_1487	0.27	-0.0
1,691,285	+		PP_1487	0.34	+0.1
1,691,286	-		PP_1487	0.34	-0.9
1,691,286	-		PP_1487	0.34	-0.3
1,691,293	+		PP_1487	0.35	-1.1
1,691,295	+		PP_1487	0.36	+0.2
1,691,399	+		PP_1487	0.51	-0.2
1,691,440	-		PP_1487	0.57	-1.1
1,691,596	+		PP_1487	0.80	+0.8
1,691,596	+		PP_1487	0.80	-1.6
1,691,596	+		PP_1487	0.80	-0.9
1,691,597	-		PP_1487	0.80	+0.9
1,691,732	-				-0.0
1,691,754	+				+0.8
1,691,755	-				-0.3
1,691,755	-				-1.7