Strain Fitness in Pseudomonas putida KT2440 around PP_1263

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,443,409	+		PP_1262	0.18	+0.3
1,443,410	-		PP_1262	0.18	-0.9
1,443,424	-		PP_1262	0.20	-0.8
1,443,452	+		PP_1262	0.23	+0.2
1,443,452	+		PP_1262	0.23	+0.6
1,443,452	+		PP_1262	0.23	-0.1
1,443,452	+		PP_1262	0.23	+0.3
1,443,671	+		PP_1262	0.46	-0.7
1,443,698	+		PP_1262	0.49	-0.3
1,443,698	+		PP_1262	0.49	-1.4
1,443,699	-		PP_1262	0.49	-0.1
1,443,699	-		PP_1262	0.49	-0.3
1,443,699	-		PP_1262	0.49	-0.6
1,443,771	-		PP_1262	0.56	-0.2
1,443,962	+		PP_1262	0.76	+0.0
1,443,966	+		PP_1262	0.77	-1.7
1,443,966	+		PP_1262	0.77	+0.7
1,443,966	+		PP_1262	0.77	-2.4
1,443,966	+		PP_1262	0.77	-0.9
1,443,967	-		PP_1262	0.77	-0.3
1,443,992	+		PP_1262	0.80	-0.4
1,444,033	-		PP_1262	0.84	-1.0
1,444,148	-				-0.9
1,444,201	+				-0.9
1,444,227	-				+0.9
1,444,269	+				+0.9
1,444,310	+				-1.0
1,444,332	+				+0.6
1,444,496	+				+1.1
1,444,496	+				+0.9
1,444,496	+				-1.1
1,444,496	+				-1.6
1,444,497	-				+0.0
1,444,497	-				-0.6
1,444,573	-		PP_1263	0.13	-3.3
1,444,755	+		PP_1263	0.25	-1.0
1,444,755	+		PP_1263	0.25	-0.2
1,444,755	+		PP_1263	0.25	+0.0
1,444,755	+		PP_1263	0.25	-1.7
1,444,756	-		PP_1263	0.25	-0.3
1,444,818	+		PP_1263	0.29	-0.5
1,444,941	+		PP_1263	0.37	-3.0
1,444,941	+		PP_1263	0.37	+0.7
1,444,941	+		PP_1263	0.37	-1.4
1,444,942	-				-0.8
1,445,427	+		PP_1263	0.69	-2.2
1,445,428	-		PP_1263	0.69	-0.9
1,445,428	-		PP_1263	0.69	-0.6
1,445,646	+		PP_1263	0.83	-2.5
1,445,647	-		PP_1263	0.83	-1.1
1,445,647	-		PP_1263	0.83	-2.2
1,445,681	+		PP_1263	0.85	-1.5
1,445,699	-		PP_1263	0.86	-0.3
1,445,999	+				+0.0
1,445,999	+				-0.3
1,445,999	+				-1.0
1,446,000	-				-0.9
1,446,000	-				-0.8
1,446,000	-				-0.1
1,446,000	-				-0.2
1,446,031	+				-3.0
1,446,031	+				-0.5
1,446,031	+				+0.4
1,446,031	+				-0.3
1,446,032	-				-1.7
1,446,032	-				-1.4
1,446,032	-				+0.1
1,446,140	+		PP_1264	0.11	+0.6
1,446,141	-		PP_1264	0.11	-1.1
1,446,150	+		PP_1264	0.11	-0.3
1,446,151	-		PP_1264	0.11	+0.3
1,446,291	-		PP_1264	0.18	-1.0
1,446,628	+		PP_1264	0.33	-0.8
1,446,775	+		PP_1264	0.40	+0.1
1,446,800	+		PP_1264	0.41	-1.0
1,446,800	+		PP_1264	0.41	-0.7
1,446,800	+		PP_1264	0.41	-0.1
1,446,800	+		PP_1264	0.41	-2.7
1,446,801	-		PP_1264	0.41	-1.7
1,446,801	-		PP_1264	0.41	-1.8
1,446,860	+		PP_1264	0.44	-0.9
1,446,860	+		PP_1264	0.44	-1.1
1,446,860	+		PP_1264	0.44	-0.4
1,446,861	-		PP_1264	0.44	-1.3