Strain Fitness in Pseudomonas putida KT2440 around PP_1215

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,392,624	+				-0.2
1,392,624	+		PP_1214	0.72	-1.2
1,392,624	+		PP_1214	0.72	-0.5
1,392,624	+		PP_1214	0.72	-0.3
1,392,625	-		PP_1214	0.72	-1.1
1,392,625	-		PP_1214	0.72	-0.2
1,392,625	-		PP_1214	0.72	-1.5
1,392,636	-				+0.8
1,392,636	-				+1.2
1,392,783	+				-0.6
1,392,784	-				-1.8
1,392,908	-				-1.5
1,392,913	+				-0.5
1,392,913	+				-0.7
1,392,914	-				+0.9
1,392,914	-				-0.8
1,392,916	+				-0.1
1,392,917	-				-1.6
1,392,941	+				+0.2
1,392,947	+				-0.1
1,392,948	-				+0.2
1,392,948	-				-1.3
1,392,959	+				-0.1
1,392,960	-				+0.3
1,393,015	+				+0.2
1,393,015	+				-0.2
1,393,033	+				-3.2
1,393,062	-				-3.4
1,393,072	-		PP_1215	0.11	-2.8
1,393,097	+		PP_1215	0.15	-2.2
1,393,098	-		PP_1215	0.16	-1.3
1,393,538	+				-0.5
1,393,558	-				-0.3
1,393,577	+				-1.7
1,393,577	+				-0.6
1,393,577	+				+1.4
1,393,577	+				-0.4
1,393,578	-				-0.7
1,393,602	+				-0.1
1,393,602	+				-0.4
1,393,703	+				-1.7
1,393,704	-				-0.8
1,393,756	-		PP_1216	0.17	-0.6
1,393,794	-		PP_1216	0.23	-1.2
1,394,099	-		PP_1216	0.73	-0.6
1,394,160	+		PP_1216	0.83	-1.7
1,394,160	+		PP_1216	0.83	-2.0
1,394,161	-		PP_1216	0.83	-2.9
1,394,354	+				-1.9
1,394,354	+				-1.6
1,394,355	-				-1.7
1,394,355	-				-0.9
1,394,355	-				-0.7