Strain Fitness in Pseudomonas putida KT2440 around PP_1211

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,388,554	-				-0.4
1,388,554	-				-1.5
1,388,554	-				+0.7
1,388,554	-				+0.5
1,388,554	-				-0.5
1,388,555	+				-0.2
1,388,556	-				+1.0
1,388,556	-				-1.6
1,388,583	+				-1.2
1,388,584	-				-0.5
1,388,584	-				-0.8
1,388,584	-				-0.2
1,388,584	-				-0.6
1,388,584	-				-1.5
1,388,648	+				+0.2
1,388,649	-				-2.7
1,388,680	+				-1.5
1,388,681	-				-1.2
1,388,681	-				-3.0
1,388,719	+				-1.6
1,388,719	+				+0.1
1,388,719	+				-0.3
1,388,781	-				-0.0
1,388,789	-				-1.5
1,388,789	-				-2.0
1,388,849	+		PP_1210	0.16	-0.2
1,388,850	-		PP_1210	0.17	-0.7
1,388,850	-		PP_1210	0.17	+1.8
1,388,850	-		PP_1210	0.17	-0.1
1,388,873	-				+0.8
1,388,873	-		PP_1210	0.22	+0.5
1,388,873	-		PP_1210	0.22	-2.9
1,388,873	-		PP_1210	0.22	-1.0
1,388,936	+		PP_1210	0.35	-1.2
1,388,937	-		PP_1210	0.35	-2.2
1,388,937	-		PP_1210	0.35	+0.3
1,388,937	-		PP_1210	0.35	-3.4
1,389,011	+		PP_1210	0.51	-0.1
1,389,020	+		PP_1210	0.53	-0.2
1,389,021	-		PP_1210	0.53	+0.2
1,389,021	-		PP_1210	0.53	+0.0
1,389,021	-				-0.5
1,389,021	-		PP_1210	0.53	+0.2
1,389,242	+				+0.6
1,389,243	-				-0.6
1,389,243	-				+0.4
1,389,395	+				+0.0
1,389,396	-				-1.5
1,389,476	-				+0.6
1,389,589	+		PP_1211	0.42	+0.1
1,389,590	-		PP_1211	0.42	-0.3
1,389,628	-		PP_1211	0.54	-1.4
1,389,628	-		PP_1211	0.54	-2.3
1,389,677	+		PP_1211	0.68	-0.3
1,389,677	+		PP_1211	0.68	-3.2
1,389,678	-		PP_1211	0.68	-1.0
1,389,678	-		PP_1211	0.68	-1.0
1,389,818	+				+1.2
1,389,820	+				+0.3
1,389,820	+				+1.4
1,389,820	+				+0.3
1,389,820	+				+1.3
1,389,820	+				+1.0
1,389,820	+				+1.1
1,389,820	+				-0.1
1,389,820	+				-0.2
1,389,820	+				+1.0
1,389,822	+				+0.3
1,389,822	+				+0.5
1,389,822	+				+0.1
1,389,822	+				-0.2
1,389,822	+				+0.1
1,389,858	+				+1.3
1,389,858	+				-0.9
1,389,858	+				+0.5
1,389,888	+				-1.1
1,389,888	+				+0.2
1,389,894	+				-0.5
1,390,128	+				-1.6
1,390,128	+				+0.8
1,390,128	+				+0.7