Strain Fitness in Pseudomonas putida KT2440 around PP_1187

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,360,621	+		PP_1185	0.80	-0.9
1,360,628	-		PP_1185	0.81	+0.4
1,360,714	+				-0.6
1,360,714	+				-0.0
1,360,729	+				-1.0
1,360,729	+				-0.4
1,360,730	-				-0.1
1,360,730	-				+0.3
1,360,762	+				+0.6
1,360,848	+				-0.5
1,360,848	+				-1.5
1,360,849	-				-1.8
1,360,849	-				-1.2
1,360,874	+				-0.4
1,360,875	-				-2.7
1,360,918	+				+0.3
1,360,918	+				+0.7
1,360,918	+				-1.9
1,360,918	+				-1.9
1,360,918	+				-0.2
1,360,918	+				+0.9
1,360,918	+				+0.3
1,360,919	-				-2.2
1,360,919	-				-0.6
1,360,924	+				+0.8
1,360,924	+				+0.4
1,360,924	+				-0.0
1,360,925	-				+0.1
1,360,925	-				-3.4
1,360,925	-				-0.8
1,360,925	-				-1.6
1,360,986	-				-1.3
1,361,228	+		PP_1186	0.43	+1.4
1,361,229	-		PP_1186	0.43	+1.3
1,361,414	+		PP_1186	0.70	-0.7
1,361,414	+		PP_1186	0.70	-0.1
1,361,415	-		PP_1186	0.71	-1.5
1,361,472	-				+0.2
1,361,588	+				-1.2
1,361,589	-				-1.6
1,361,589	-				+0.2
1,361,828	-		PP_1187	0.16	-0.6
1,361,839	+		PP_1187	0.17	-1.0
1,361,839	+		PP_1187	0.17	-0.8
1,361,857	+		PP_1187	0.18	-1.5
1,361,857	+		PP_1187	0.18	-0.6
1,361,858	-		PP_1187	0.18	-1.0
1,361,858	-		PP_1187	0.18	-1.1
1,361,859	+		PP_1187	0.18	-0.6
1,361,859	+		PP_1187	0.18	+0.6
1,361,860	-		PP_1187	0.18	-0.9
1,361,860	-		PP_1187	0.18	-1.9
1,361,860	-		PP_1187	0.18	-3.4
1,361,923	+		PP_1187	0.23	-1.0
1,361,923	+		PP_1187	0.23	+0.6
1,361,995	+		PP_1187	0.29	-1.9
1,361,996	+		PP_1187	0.29	-1.7
1,361,996	+		PP_1187	0.29	-1.4
1,361,996	+		PP_1187	0.29	-1.2
1,362,011	+		PP_1187	0.30	-0.1
1,362,012	-		PP_1187	0.30	+0.3
1,362,056	+		PP_1187	0.33	-2.6
1,362,057	-		PP_1187	0.33	-3.6
1,362,057	-		PP_1187	0.33	-1.5
1,362,057	-		PP_1187	0.33	-0.1
1,362,074	-		PP_1187	0.34	-2.0
1,362,074	-		PP_1187	0.34	-0.6
1,362,109	+		PP_1187	0.37	-1.4
1,362,273	+		PP_1187	0.49	-2.5
1,362,326	-				-2.5
1,362,479	-		PP_1187	0.64	-1.4
1,362,530	+		PP_1187	0.68	-1.8
1,362,531	-		PP_1187	0.68	-0.7
1,362,531	-		PP_1187	0.68	+0.4
1,362,632	+		PP_1187	0.76	-1.6
1,362,739	+		PP_1187	0.84	-0.6
1,362,883	+				-2.7
1,362,883	+				-0.7
1,362,883	+				+1.8
1,362,883	+				-3.4
1,362,962	+				+1.3
1,363,118	+				-1.2
1,363,175	+				+0.1
1,363,246	-				+0.3
1,363,341	+				-1.1
1,363,341	+				+0.1
1,363,341	+				+0.4
1,363,341	+				+0.7
1,363,342	-				-0.3
1,363,342	-				+0.3
1,363,389	+				+0.5
1,363,389	+				-0.4
1,363,390	-				-0.1
1,363,390	-				+0.5
1,363,551	+		PP_1188	0.18	-0.9
1,363,551	+		PP_1188	0.18	+1.1
1,363,552	-		PP_1188	0.18	-0.3
1,363,671	+		PP_1188	0.27	-0.3
1,363,672	-		PP_1188	0.28	-0.9
1,363,716	-		PP_1188	0.31	-2.4
1,363,716	-		PP_1188	0.31	+0.9
1,363,821	+		PP_1188	0.39	+1.8
1,363,821	+		PP_1188	0.39	-2.4
1,363,822	-		PP_1188	0.39	+1.7
1,363,944	+		PP_1188	0.48	+0.1
1,363,945	-		PP_1188	0.48	+0.7
1,363,945	-		PP_1188	0.48	-0.9