Strain Fitness in Pseudomonas putida KT2440 around PP_1164

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,338,756	+		PP_1163	0.72	+0.1
1,338,815	+		PP_1163	0.75	-0.8
1,338,815	+		PP_1163	0.75	+0.0
1,338,816	-		PP_1163	0.75	+0.6
1,338,875	+		PP_1163	0.78	-0.0
1,338,885	-		PP_1163	0.79	-1.0
1,338,920	+		PP_1163	0.80	+0.0
1,339,061	+				+0.1
1,339,061	+		PP_1163	0.87	+0.2
1,339,062	-		PP_1163	0.87	-0.6
1,339,178	-				-1.0
1,339,178	-				+0.3
1,339,371	+				-0.1
1,339,372	-				+0.7
1,339,372	-				-0.1
1,339,372	-				-3.2
1,339,412	+				-2.9
1,339,455	+				-0.7
1,339,455	+				+0.6
1,339,456	-				-0.0
1,339,456	-				+0.1
1,339,456	-				-0.1
1,339,824	+		PP_1164	0.44	-0.7
1,340,154	-		PP_1164	0.81	-1.7
1,340,255	+				+1.0
1,340,255	+				+1.0
1,340,255	+				-0.9
1,340,256	-				+0.6
1,340,324	+				-0.0
1,340,324	+				-2.4
1,340,413	-				-0.1
1,340,413	-				-1.1
1,340,547	+		PP_1165	0.17	-0.1
1,340,547	+				-1.2
1,340,667	-		PP_1165	0.31	+0.2
1,340,716	-		PP_1165	0.36	-0.4
1,340,716	-		PP_1165	0.36	-0.0
1,340,766	+		PP_1165	0.42	-0.5
1,340,796	+		PP_1165	0.46	+0.3
1,340,846	+		PP_1165	0.51	-0.1
1,340,846	+				-1.3
1,340,846	+		PP_1165	0.51	+0.3
1,340,846	+		PP_1165	0.51	-1.1
1,340,847	-		PP_1165	0.51	-1.7
1,340,847	-		PP_1165	0.51	-0.1
1,340,847	-		PP_1165	0.51	-0.4
1,340,848	+		PP_1165	0.52	+0.1
1,340,848	+		PP_1165	0.52	-0.3
1,340,848	+		PP_1165	0.52	-0.8
1,340,848	+		PP_1165	0.52	-0.0
1,340,848	+		PP_1165	0.52	+0.5
1,340,848	+		PP_1165	0.52	-0.6
1,340,848	+		PP_1165	0.52	+0.1
1,340,848	+		PP_1165	0.52	+0.2
1,340,848	+		PP_1165	0.52	-0.5
1,340,848	+		PP_1165	0.52	+0.8
1,340,848	+		PP_1165	0.52	+1.0
1,340,848	+		PP_1165	0.52	-0.7
1,340,848	+		PP_1165	0.52	+2.3
1,340,848	+		PP_1165	0.52	+2.5
1,340,848	+		PP_1165	0.52	-0.3
1,340,848	+		PP_1165	0.52	+0.1
1,340,849	-		PP_1165	0.52	+0.4
1,340,849	-		PP_1165	0.52	-1.0
1,340,849	-		PP_1165	0.52	-0.1
1,340,849	-		PP_1165	0.52	+0.6
1,340,849	-		PP_1165	0.52	+0.5
1,340,849	-		PP_1165	0.52	+0.1
1,340,849	-		PP_1165	0.52	+0.1
1,340,849	-		PP_1165	0.52	+0.8
1,340,849	-		PP_1165	0.52	+0.7
1,340,927	+		PP_1165	0.61	+0.4
1,341,122	-		PP_1165	0.83	-0.6
1,341,282	+				-0.3
1,341,283	-				-0.3
1,341,309	+				+0.7
1,341,309	+				+1.0
1,341,310	-				-1.0