Strain Fitness in Pseudomonas putida KT2440 around PP_1142

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,306,954	-		PP_1141	0.41	+1.4
1,306,956	+		PP_1141	0.41	-1.0
1,306,956	+		PP_1141	0.41	+1.0
1,306,957	-		PP_1141	0.41	+0.3
1,306,957	-		PP_1141	0.41	+1.7
1,307,100	+		PP_1141	0.54	-1.0
1,307,100	+		PP_1141	0.54	+0.4
1,307,101	-		PP_1141	0.54	+0.2
1,307,101	-		PP_1141	0.54	+0.2
1,307,157	+		PP_1141	0.59	+1.7
1,307,157	+		PP_1141	0.59	-0.4
1,307,158	-		PP_1141	0.59	-1.9
1,307,158	-		PP_1141	0.59	+0.3
1,307,217	+		PP_1141	0.64	-0.4
1,307,217	+		PP_1141	0.64	+0.4
1,307,283	+		PP_1141	0.70	-0.0
1,307,284	-		PP_1141	0.70	-1.2
1,307,284	-		PP_1141	0.70	-2.4
1,307,284	-		PP_1141	0.70	-0.0
1,307,284	-		PP_1141	0.70	+0.1
1,307,404	-		PP_1141	0.81	+0.9
1,307,404	-		PP_1141	0.81	+0.5
1,307,452	+		PP_1141	0.85	+0.4
1,307,453	-		PP_1141	0.85	-1.2
1,307,583	-				-0.6
1,307,618	-				+1.5
1,307,618	-				-0.4
1,307,618	-				+0.6
1,307,646	+				-0.1
1,307,646	+				-0.5
1,307,646	+				-1.5
1,307,647	-				+1.0
1,307,648	+				+0.6
1,307,648	+				+0.4
1,307,667	+				-0.2
1,307,667	+				+1.0
1,307,758	-				+0.7
1,307,758	-				+0.2
1,307,834	-				-1.8
1,307,904	+				+0.9
1,307,905	-				-1.8
1,308,002	-		PP_1142	0.24	-0.7
1,308,296	+				-0.9
1,308,363	+				+0.3
1,308,364	-				-0.0
1,308,364	-				+1.3
1,308,401	+				+0.8
1,308,401	+				-0.0
1,308,494	+				-0.3
1,308,495	-				+0.4
1,308,495	-				+0.5
1,308,677	+		PP_1143	0.22	+0.4
1,308,677	+		PP_1143	0.22	+1.0
1,308,677	+		PP_1143	0.22	-0.5
1,308,975	+		PP_1143	0.56	-0.6
1,308,975	+		PP_1143	0.56	+0.0
1,309,046	+		PP_1143	0.64	+0.9
1,309,047	-		PP_1143	0.64	-0.8
1,309,047	-		PP_1143	0.64	-0.6
1,309,047	-		PP_1143	0.64	-1.0
1,309,199	+		PP_1143	0.81	-0.1
1,309,199	+		PP_1143	0.81	-0.1
1,309,200	-		PP_1143	0.81	-1.8
1,309,200	-		PP_1143	0.81	-1.2