Strain Fitness in Pseudomonas putida KT2440 around PP_1002

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,140,015	-		PP_1001	0.24	-3.5
1,140,027	+		PP_1001	0.25	-2.5
1,140,251	-		PP_1001	0.43	-1.5
1,140,381	+		PP_1001	0.53	-4.8
1,140,426	+		PP_1001	0.57	-2.0
1,140,427	-		PP_1001	0.57	-3.0
1,140,537	+		PP_1001	0.66	-1.3
1,140,537	+		PP_1001	0.66	-1.4
1,140,644	-		PP_1001	0.74	-1.8
1,140,644	-		PP_1001	0.74	-2.5
1,140,945	+				-3.5
1,140,946	-				-4.0
1,140,946	-				-2.4
1,141,023	+				-3.3
1,141,032	+				-3.5
1,141,033	-				-3.9
1,141,033	-				-1.5
1,141,174	-		PP_1002	0.12	+0.6
1,141,192	-		PP_1002	0.13	-2.4
1,141,192	-		PP_1002	0.13	-2.9
1,141,210	-		PP_1002	0.15	-4.2
1,141,210	-		PP_1002	0.15	-1.9
1,141,269	+		PP_1002	0.19	-0.5
1,141,270	-		PP_1002	0.19	-0.8
1,141,303	-		PP_1002	0.21	-1.6
1,141,320	+		PP_1002	0.22	-1.7
1,141,351	-		PP_1002	0.25	-2.4
1,141,365	+		PP_1002	0.25	+0.8
1,141,365	+		PP_1002	0.25	-0.2
1,141,366	-		PP_1002	0.26	-0.9
1,141,366	-		PP_1002	0.26	-3.2
1,141,366	-		PP_1002	0.26	+0.2
1,141,877	-		PP_1002	0.61	-0.3
1,142,042	+		PP_1002	0.73	-0.3
1,142,086	-		PP_1002	0.76	-2.4
1,142,086	-		PP_1002	0.76	-2.8
1,142,176	-		PP_1002	0.82	-1.9
1,142,176	-		PP_1002	0.82	+1.4
1,142,176	-		PP_1002	0.82	-2.1
1,142,176	-		PP_1002	0.82	-0.3
1,142,200	-		PP_1002	0.84	-2.4
1,142,200	-		PP_1002	0.84	-4.0
1,142,200	-		PP_1002	0.84	-0.8
1,142,205	+		PP_1002	0.84	-2.6
1,142,205	+		PP_1002	0.84	-1.3
1,142,205	+		PP_1002	0.84	-1.0
1,142,205	+		PP_1002	0.84	-2.3
1,142,206	-		PP_1002	0.84	-1.9
1,142,354	-				+0.2
1,142,391	-				-1.1
1,142,430	+				-1.7
1,142,430	+				-1.8
1,142,431	-				-0.2
1,142,466	-				-0.4
1,142,466	-				-0.4
1,142,495	+				-0.8
1,142,495	+				-1.5
1,142,583	+				+0.3
1,142,584	-				+0.2
1,142,606	-				+0.2
1,142,644	-				+0.4
1,142,644	-				-0.7
1,142,746	+				-2.4
1,142,771	-				-0.1
1,142,789	+				+0.8
1,142,790	-				-0.4
1,142,794	+				-3.1
1,142,795	-				-1.2
1,142,810	+				-2.1
1,142,810	+				-1.0
1,142,810	+				-0.1
1,142,810	+				-3.9
1,143,085	+		PP_1003	0.15	-2.9
1,143,086	-		PP_1003	0.15	-0.1
1,143,087	+		PP_1003	0.16	+0.3
1,143,087	+		PP_1003	0.16	-1.2
1,143,087	+		PP_1003	0.16	-0.5
1,143,087	+		PP_1003	0.16	+0.5
1,143,087	+		PP_1003	0.16	-0.4
1,143,088	-		PP_1003	0.16	-0.2
1,143,088	-		PP_1003	0.16	+1.4
1,143,088	-		PP_1003	0.16	+0.1
1,143,088	-		PP_1003	0.16	-1.0
1,143,088	-		PP_1003	0.16	-0.3
1,143,093	+		PP_1003	0.16	+1.3
1,143,094	-		PP_1003	0.16	-0.1
1,143,094	-		PP_1003	0.16	+1.3
1,143,094	-		PP_1003	0.16	+0.9
1,143,117	+		PP_1003	0.18	-2.1
1,143,117	+		PP_1003	0.18	-0.3
1,143,117	+		PP_1003	0.18	+0.5
1,143,118	-		PP_1003	0.18	-0.3
1,143,211	-		PP_1003	0.24	+0.5
1,143,211	-		PP_1003	0.24	+0.9
1,143,211	-		PP_1003	0.24	+0.5
1,143,281	-		PP_1003	0.29	+0.4