Strain Fitness in Pseudomonas putida KT2440 around PP_1001

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,138,884	+		PP_1000	0.25	-2.3
1,139,163	+		PP_1000	0.52	-3.6
1,139,163	+		PP_1000	0.52	-3.0
1,139,170	-		PP_1000	0.53	-1.0
1,139,170	-		PP_1000	0.53	-2.7
1,139,170	-		PP_1000	0.53	-2.7
1,139,244	+		PP_1000	0.60	+1.1
1,139,326	-		PP_1000	0.68	-1.3
1,139,340	+		PP_1000	0.70	-1.7
1,139,340	+		PP_1000	0.70	-3.2
1,139,340	+		PP_1000	0.70	-3.1
1,139,341	-		PP_1000	0.70	-3.6
1,139,341	-		PP_1000	0.70	-3.0
1,139,415	+		PP_1000	0.77	-1.4
1,139,416	-		PP_1000	0.77	+0.8
1,139,416	-		PP_1000	0.77	-3.5
1,139,439	+		PP_1000	0.80	-3.5
1,139,439	+		PP_1000	0.80	-3.7
1,139,440	-		PP_1000	0.80	-0.2
1,139,538	+		PP_1000	0.89	-3.2
1,139,538	+		PP_1000	0.89	-1.2
1,139,578	-				-2.6
1,139,706	-				-2.8
1,139,715	+				-0.5
1,139,716	-				-3.5
1,139,718	+				-2.9
1,139,719	-				-0.8
1,139,841	+		PP_1001	0.10	-1.8
1,139,842	-		PP_1001	0.10	-0.0
1,139,842	-		PP_1001	0.10	-3.0
1,140,015	-		PP_1001	0.24	-3.5
1,140,027	+		PP_1001	0.25	-2.5
1,140,251	-		PP_1001	0.43	-1.5
1,140,381	+		PP_1001	0.53	-4.8
1,140,426	+		PP_1001	0.57	-2.0
1,140,427	-		PP_1001	0.57	-3.0
1,140,537	+		PP_1001	0.66	-1.3
1,140,537	+		PP_1001	0.66	-1.4
1,140,644	-		PP_1001	0.74	-1.8
1,140,644	-		PP_1001	0.74	-2.5
1,140,945	+				-3.5
1,140,946	-				-4.0
1,140,946	-				-2.4
1,141,023	+				-3.3
1,141,032	+				-3.5
1,141,033	-				-3.9
1,141,033	-				-1.5
1,141,174	-		PP_1002	0.12	+0.6
1,141,192	-		PP_1002	0.13	-2.4
1,141,192	-		PP_1002	0.13	-2.9
1,141,210	-		PP_1002	0.15	-4.2
1,141,210	-		PP_1002	0.15	-1.9
1,141,269	+		PP_1002	0.19	-0.5
1,141,270	-		PP_1002	0.19	-0.8
1,141,303	-		PP_1002	0.21	-1.6
1,141,320	+		PP_1002	0.22	-1.7
1,141,351	-		PP_1002	0.25	-2.4
1,141,365	+		PP_1002	0.25	+0.8
1,141,365	+		PP_1002	0.25	-0.2
1,141,366	-		PP_1002	0.26	-0.9
1,141,366	-		PP_1002	0.26	-3.2
1,141,366	-		PP_1002	0.26	+0.2
1,141,877	-		PP_1002	0.61	-0.3