Strain Fitness in Pseudomonas putida KT2440 around PP_0888

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,030,318	+		PP_0887	0.28	-0.2
1,030,318	+		PP_0887	0.28	+0.4
1,030,318	+		PP_0887	0.28	-2.5
1,030,318	+		PP_0887	0.28	+0.9
1,030,318	+		PP_0887	0.28	-1.7
1,030,319	-		PP_0887	0.28	+1.0
1,030,319	-		PP_0887	0.28	+0.1
1,030,319	-		PP_0887	0.28	+3.0
1,030,319	-		PP_0887	0.28	-0.2
1,030,319	-		PP_0887	0.28	-0.5
1,030,354	+		PP_0887	0.30	+0.8
1,030,354	+		PP_0887	0.30	-0.2
1,030,355	-		PP_0887	0.30	-2.0
1,030,357	+		PP_0887	0.31	-0.1
1,030,357	+		PP_0887	0.31	+0.4
1,030,358	-		PP_0887	0.31	-0.2
1,030,358	-		PP_0887	0.31	-3.0
1,030,439	-		PP_0887	0.37	-0.1
1,030,507	+		PP_0887	0.42	-0.1
1,030,507	+		PP_0887	0.42	+0.4
1,030,508	-		PP_0887	0.42	-0.4
1,030,785	-		PP_0887	0.62	-1.9
1,030,785	-		PP_0887	0.62	-3.1
1,030,785	-		PP_0887	0.62	-2.0
1,030,925	-		PP_0887	0.73	-0.8
1,030,995	-		PP_0887	0.78	-0.2
1,031,083	-		PP_0887	0.84	+0.1
1,031,142	+		PP_0887	0.89	+0.5
1,031,142	+		PP_0887	0.89	-1.8
1,031,142	+		PP_0887	0.89	-1.0
1,031,142	+		PP_0887	0.89	+1.0
1,031,142	+		PP_0887	0.89	+0.1
1,031,143	-		PP_0887	0.89	-0.8
1,031,145	+		PP_0887	0.89	+0.2
1,031,145	+		PP_0887	0.89	+1.0
1,031,146	-		PP_0887	0.89	+0.2
1,031,227	+				-2.3
1,031,228	-				-1.2
1,031,228	-				-1.9
1,031,228	-				-1.7
1,031,229	+				+1.5
1,031,229	+				-0.6
1,031,229	+				+0.5
1,031,273	-				-0.5
1,031,273	-				-1.2
1,031,470	-		PP_0888	0.31	-2.2
1,031,622	+		PP_0888	0.58	-2.3
1,031,622	+		PP_0888	0.58	-1.2
1,031,623	-		PP_0888	0.58	-2.3
1,031,774	+		PP_0888	0.85	-1.5
1,031,775	-		PP_0888	0.86	-0.2
1,031,971	+				+0.9
1,031,971	+				-0.9
1,031,972	-				-0.1
1,031,972	-				-1.5
1,031,972	-				+1.2
1,032,158	+		PP_0889	0.22	-0.8
1,032,159	-		PP_0889	0.22	+0.5
1,032,159	-		PP_0889	0.22	-1.6
1,032,175	-		PP_0889	0.24	-0.3
1,032,221	-		PP_0889	0.28	+1.1
1,032,233	-		PP_0889	0.29	-0.8
1,032,303	+		PP_0889	0.35	-0.8
1,032,303	+		PP_0889	0.35	-0.1
1,032,304	-		PP_0889	0.35	+0.2
1,032,304	-		PP_0889	0.35	-0.6
1,032,304	-		PP_0889	0.35	-1.1
1,032,304	-		PP_0889	0.35	+0.2
1,032,384	+		PP_0889	0.42	+0.5
1,032,384	+		PP_0889	0.42	-0.5
1,032,390	+		PP_0889	0.42	+0.6
1,032,390	+		PP_0889	0.42	-0.3
1,032,426	+		PP_0889	0.46	+0.4
1,032,426	+		PP_0889	0.46	+0.6
1,032,429	-		PP_0889	0.46	-1.0
1,032,505	-		PP_0889	0.53	+0.2
1,032,505	-		PP_0889	0.53	-2.5
1,032,577	-		PP_0889	0.59	-0.9
1,032,648	+		PP_0889	0.65	+0.4
1,032,648	+		PP_0889	0.65	-0.7
1,032,648	+		PP_0889	0.65	-0.3
1,032,648	+		PP_0889	0.65	-0.1
1,032,648	+		PP_0889	0.65	-0.6
1,032,648	+		PP_0889	0.65	-0.7
1,032,648	+		PP_0889	0.65	-0.4
1,032,649	-		PP_0889	0.65	+0.5
1,032,649	-		PP_0889	0.65	+1.3
1,032,649	-		PP_0889	0.65	-0.7
1,032,649	-		PP_0889	0.65	-0.0
1,032,652	+		PP_0889	0.66	-1.7
1,032,652	+		PP_0889	0.66	+0.3
1,032,652	+		PP_0889	0.66	-0.0
1,032,653	-		PP_0889	0.66	-0.1
1,032,653	-		PP_0889	0.66	+0.7
1,032,664	-		PP_0889	0.67	+0.7
1,032,664	-		PP_0889	0.67	+0.5
1,032,669	+		PP_0889	0.67	-0.5
1,032,695	+		PP_0889	0.69	-0.3
1,032,695	+		PP_0889	0.69	+1.8
1,032,760	+		PP_0889	0.75	+0.7
1,032,761	-		PP_0889	0.75	+1.7
1,032,761	-		PP_0889	0.75	+0.3