Strain Fitness in Pseudomonas putida KT2440 around PP_0855

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0854 and PP_0855 are separated by 39 nucleotidesPP_0855 and PP_0856 are separated by 0 nucleotides PP_0854: PP_0854 - Histidine--tRNA ligase, at 988,149 to 989,438 _0854 PP_0855: PP_0855 - conserved protein of unknown function, at 989,478 to 990,119 _0855 PP_0856: PP_0856 - conserved lipoprotein of unknown function, at 990,120 to 991,262 _0856 Position (kb) 989 990 991Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 989.436 kb on + strandat 989.471 kb on + strandat 989.471 kb on + strandat 989.472 kb on - strandat 989.604 kb on + strand, within PP_0855at 989.605 kb on - strand, within PP_0855at 989.745 kb on + strand, within PP_0855at 989.746 kb on - strand, within PP_0855at 989.755 kb on - strand, within PP_0855at 989.890 kb on + strand, within PP_0855at 990.104 kb on + strandat 990.117 kb on + strandat 990.117 kb on + strandat 990.118 kb on - strandat 990.118 kb on - strandat 990.160 kb on + strandat 990.161 kb on - strandat 990.288 kb on + strand, within PP_0856at 990.288 kb on + strand, within PP_0856at 990.288 kb on + strand, within PP_0856at 990.289 kb on - strand, within PP_0856at 990.289 kb on - strand, within PP_0856at 990.323 kb on + strand, within PP_0856at 990.323 kb on + strand, within PP_0856at 990.327 kb on + strand, within PP_0856at 990.327 kb on + strand, within PP_0856at 990.328 kb on - strand, within PP_0856at 990.431 kb on - strand, within PP_0856at 990.435 kb on + strand, within PP_0856at 990.728 kb on - strand, within PP_0856at 990.855 kb on + strand, within PP_0856at 990.855 kb on + strand, within PP_0856at 990.936 kb on + strand, within PP_0856at 990.969 kb on + strand, within PP_0856at 991.086 kb on + strand, within PP_0856

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Per-strain Table

Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
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989,436 + +1.2
989,471 + -0.3
989,471 + +0.3
989,472 - -3.1
989,604 + PP_0855 0.20 -1.4
989,605 - PP_0855 0.20 -1.9
989,745 + PP_0855 0.42 -0.5
989,746 - PP_0855 0.42 -0.8
989,755 - PP_0855 0.43 -1.3
989,890 + PP_0855 0.64 -2.2
990,104 + -3.4
990,117 + -3.1
990,117 + -3.4
990,118 - -1.2
990,118 - -2.7
990,160 + -3.0
990,161 - -1.2
990,288 + PP_0856 0.15 -3.3
990,288 + PP_0856 0.15 -2.9
990,288 + PP_0856 0.15 -4.7
990,289 - PP_0856 0.15 -1.0
990,289 - PP_0856 0.15 -2.1
990,323 + PP_0856 0.18 -0.5
990,323 + PP_0856 0.18 -4.2
990,327 + PP_0856 0.18 -2.3
990,327 + PP_0856 0.18 -1.8
990,328 - PP_0856 0.18 -2.7
990,431 - PP_0856 0.27 -2.5
990,435 + PP_0856 0.28 -2.9
990,728 - PP_0856 0.53 -3.0
990,855 + PP_0856 0.64 -2.3
990,855 + PP_0856 0.64 -2.3
990,936 + PP_0856 0.71 -3.4
990,969 + PP_0856 0.74 -1.4
991,086 + PP_0856 0.85 -3.1

Or see this region's nucleotide sequence