Strain Fitness in Pseudomonas putida KT2440 around PP_0719

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
835,296	+		PP_0718	0.54	-1.8
835,297	-		PP_0718	0.54	-0.6
835,297	-		PP_0718	0.54	+0.3
835,372	-		PP_0718	0.59	-3.0
835,534	+		PP_0718	0.68	-0.1
835,535	-		PP_0718	0.68	-0.7
835,535	-		PP_0718	0.68	+0.0
835,536	+		PP_0718	0.68	+1.0
835,536	+		PP_0718	0.68	-1.1
835,552	+		PP_0718	0.69	+0.8
835,552	+		PP_0718	0.69	+0.1
835,553	-		PP_0718	0.69	+0.8
835,623	+		PP_0718	0.73	+0.6
835,623	+		PP_0718	0.73	+0.1
835,623	+		PP_0718	0.73	+0.3
835,623	+		PP_0718	0.73	-0.1
835,624	-		PP_0718	0.73	+0.4
835,624	-		PP_0718	0.73	-0.0
835,648	+		PP_0718	0.75	-1.4
835,648	+		PP_0718	0.75	-1.1
835,648	+		PP_0718	0.75	-3.0
835,649	-		PP_0718	0.75	+0.2
835,649	-		PP_0718	0.75	+0.2
835,787	-		PP_0718	0.83	-0.0
835,787	-		PP_0718	0.83	+0.3
835,787	-		PP_0718	0.83	+1.7
835,870	+		PP_0718	0.88	+0.3
835,870	+		PP_0718	0.88	+0.3
835,893	-		PP_0718	0.89	+0.8
835,893	-		PP_0718	0.89	+1.7
835,897	+		PP_0718	0.89	+0.3
835,897	+		PP_0718	0.89	+0.3
835,898	-		PP_0718	0.89	-1.7
835,906	+		PP_0718	0.90	+0.3
835,906	+		PP_0718	0.90	-0.1
835,906	+		PP_0718	0.90	-0.9
835,906	+		PP_0718	0.90	-0.5
835,907	-				-1.3
835,907	-				+0.2
835,907	-				-0.1
835,907	-				-0.4
835,907	-				-0.5
835,907	-				-0.2
835,907	-				+0.7
835,907	-				-1.9
835,907	-				+0.9
835,907	-				+0.2
835,907	-				+0.1
835,910	+				-0.5
835,911	-				+0.9
835,936	+				-1.0
835,937	-				-4.3
836,015	-				-0.0
836,015	-				+0.8
836,015	-				+0.6
836,015	-				-0.1
836,015	-				+0.5
836,015	-				+0.3
836,118	+				+2.1
836,118	+				+0.9
836,118	+				+2.7
836,118	+				-0.8
836,119	-				-0.3
836,119	-				+0.3
836,119	-				-0.7
836,119	-				+1.5
836,119	-				-0.3
836,264	-				+0.7
836,301	+				-2.7
836,302	-				-1.1
836,478	-		PP_0719	0.20	-0.9
836,502	+		PP_0719	0.22	+0.7
836,502	+		PP_0719	0.22	-1.3
836,739	+		PP_0719	0.44	-1.9
836,740	-		PP_0719	0.44	-0.9
836,916	-		PP_0719	0.60	-1.7
837,360	-				-0.6
837,996	-				-1.3