Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0494 and PP_t75 are separated by 6 nucleotides PP_t75 and PP_0495 are separated by 106 nucleotides PP_0495 and PP_0496 are separated by 72 nucleotides
PP_0494: PP_0494 - selenocysteyl-tRNA-specific translation elongation factor, at 582,135 to 584,057
_0494
PP_t75: PP_t75 - tRNA-Sec, at 584,064 to 584,159
_t75
PP_0495: PP_0495 - type 1 L-asparaginase, at 584,266 to 585,255
_0495
PP_0496: PP_0496 - Sodium/alanine symporter, at 585,328 to 586,770
_0496
Position (kb) 584
585
586 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 583.645 kb on + strand, within PP_0494 at 583.777 kb on + strand, within PP_0494 at 583.897 kb on + strand at 583.897 kb on + strand at 583.898 kb on - strand at 583.922 kb on + strand at 583.922 kb on + strand at 583.922 kb on + strand at 584.203 kb on - strand at 584.203 kb on - strand at 584.339 kb on - strand at 584.426 kb on + strand, within PP_0495 at 584.426 kb on + strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.427 kb on - strand, within PP_0495 at 584.467 kb on - strand, within PP_0495 at 584.552 kb on + strand, within PP_0495 at 584.586 kb on - strand, within PP_0495 at 584.587 kb on + strand, within PP_0495 at 584.626 kb on + strand, within PP_0495 at 584.670 kb on - strand, within PP_0495 at 584.670 kb on - strand, within PP_0495 at 584.756 kb on - strand, within PP_0495 at 584.798 kb on + strand, within PP_0495 at 584.798 kb on + strand, within PP_0495 at 584.798 kb on + strand, within PP_0495 at 584.799 kb on - strand, within PP_0495 at 584.911 kb on + strand, within PP_0495 at 584.912 kb on - strand, within PP_0495 at 584.912 kb on - strand, within PP_0495 at 584.912 kb on - strand, within PP_0495 at 584.961 kb on - strand, within PP_0495 at 585.066 kb on + strand, within PP_0495 at 585.067 kb on - strand, within PP_0495 at 585.067 kb on - strand, within PP_0495 at 585.224 kb on + strand at 585.224 kb on + strand at 585.224 kb on + strand at 585.245 kb on - strand at 585.455 kb on - strand at 585.455 kb on - strand at 585.479 kb on + strand, within PP_0496 at 585.479 kb on + strand, within PP_0496 at 585.692 kb on + strand, within PP_0496 at 585.692 kb on + strand, within PP_0496 at 585.692 kb on + strand, within PP_0496 at 585.692 kb on + strand, within PP_0496 at 585.693 kb on - strand, within PP_0496 at 585.695 kb on + strand, within PP_0496 at 585.695 kb on + strand, within PP_0496 at 585.696 kb on - strand, within PP_0496 at 585.696 kb on - strand, within PP_0496 at 585.696 kb on - strand, within PP_0496 at 585.696 kb on - strand, within PP_0496 at 585.701 kb on + strand, within PP_0496 at 585.701 kb on + strand, within PP_0496 at 585.702 kb on - strand, within PP_0496 at 585.702 kb on - strand, within PP_0496 at 585.827 kb on + strand, within PP_0496 at 585.827 kb on + strand, within PP_0496 at 585.828 kb on - strand, within PP_0496 at 586.118 kb on + strand, within PP_0496 at 586.119 kb on - strand, within PP_0496
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 583,645 + PP_0494 0.79 -0.1 583,777 + PP_0494 0.85 +0.6 583,897 + +0.7 583,897 + +0.2 583,898 - -0.7 583,922 + -1.7 583,922 + -1.6 583,922 + -2.2 584,203 - +0.7 584,203 - -0.9 584,339 - -1.5 584,426 + PP_0495 0.16 -1.0 584,426 + PP_0495 0.16 -0.6 584,427 - PP_0495 0.16 -1.6 584,427 - PP_0495 0.16 +0.1 584,427 - PP_0495 0.16 -0.0 584,427 - PP_0495 0.16 +0.2 584,467 - PP_0495 0.20 -1.6 584,552 + PP_0495 0.29 -3.4 584,586 - PP_0495 0.32 -0.5 584,587 + PP_0495 0.32 +0.7 584,626 + PP_0495 0.36 -0.3 584,670 - PP_0495 0.41 -1.7 584,670 - PP_0495 0.41 -1.5 584,756 - PP_0495 0.49 -0.5 584,798 + PP_0495 0.54 +0.4 584,798 + PP_0495 0.54 -0.9 584,798 + PP_0495 0.54 -1.7 584,799 - PP_0495 0.54 -1.0 584,911 + PP_0495 0.65 -0.5 584,912 - PP_0495 0.65 -0.4 584,912 - PP_0495 0.65 -1.7 584,912 - PP_0495 0.65 -0.3 584,961 - PP_0495 0.70 -3.3 585,066 + PP_0495 0.81 -0.9 585,067 - PP_0495 0.81 +0.2 585,067 - PP_0495 0.81 -1.4 585,224 + +0.8 585,224 + +0.2 585,224 + -2.9 585,245 - -0.5 585,455 - +0.5 585,455 - +0.1 585,479 + PP_0496 0.10 -0.7 585,479 + PP_0496 0.10 +0.2 585,692 + PP_0496 0.25 -0.8 585,692 + PP_0496 0.25 -0.7 585,692 + PP_0496 0.25 -0.6 585,692 + PP_0496 0.25 +0.1 585,693 - PP_0496 0.25 -0.1 585,695 + PP_0496 0.25 +0.4 585,695 + PP_0496 0.25 +0.8 585,696 - PP_0496 0.26 -1.5 585,696 - PP_0496 0.26 +0.2 585,696 - PP_0496 0.26 -1.3 585,696 - PP_0496 0.26 -0.4 585,701 + PP_0496 0.26 -2.5 585,701 + PP_0496 0.26 -0.5 585,702 - PP_0496 0.26 -0.8 585,702 - PP_0496 0.26 -0.6 585,827 + PP_0496 0.35 -0.4 585,827 + PP_0496 0.35 +0.1 585,828 - PP_0496 0.35 +0.0 586,118 + PP_0496 0.55 -0.5 586,119 - PP_0496 0.55 -0.4
Or see this region's nucleotide sequence