Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0272 and PP_0273 are separated by 65 nucleotides PP_0273 and PP_5435 are separated by 175 nucleotides PP_5435 and PP_0274 are separated by 41 nucleotides PP_0274 and PP_0275 are separated by 419 nucleotides PP_0275 and PP_0276 overlap by 4 nucleotides
PP_0272: PP_0272 - Outer membrane ferric siderophore receptor, at 330,111 to 332,408
_0272
PP_0273: PP_0273 - conserved protein of unknown function, at 332,474 to 332,686
_0273
PP_5435: PP_5435 - conserved protein of unknown function, at 332,862 to 333,215
_5435
PP_0274: PP_0274 - putative transcriptional regulator containing HTH domain, at 333,257 to 333,730
_0274
PP_0275: PP_0275 - conserved protein of unknown function, at 334,150 to 334,365
_0275
PP_0276: PP_0276 - Transcriptional regulator, Cro/CI family, at 334,362 to 334,685
_0276
Position (kb) 333
334 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 332.265 kb on + strand at 332.265 kb on + strand at 332.266 kb on - strand at 332.325 kb on + strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.326 kb on - strand at 332.328 kb on + strand at 332.328 kb on + strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.329 kb on - strand at 332.346 kb on + strand at 332.346 kb on + strand at 332.347 kb on - strand at 332.347 kb on - strand at 332.376 kb on - strand at 332.475 kb on + strand at 332.476 kb on - strand at 332.487 kb on - strand at 332.616 kb on + strand, within PP_0273 at 332.616 kb on + strand, within PP_0273 at 332.616 kb on + strand, within PP_0273 at 332.617 kb on - strand, within PP_0273 at 332.617 kb on - strand, within PP_0273 at 332.715 kb on + strand at 332.715 kb on + strand at 332.778 kb on + strand at 332.779 kb on - strand at 332.795 kb on + strand at 332.796 kb on - strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.837 kb on + strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.838 kb on - strand at 332.929 kb on + strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.081 kb on - strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.084 kb on + strand, within PP_5435 at 333.085 kb on - strand, within PP_5435 at 333.085 kb on - strand, within PP_5435 at 333.085 kb on - strand, within PP_5435 at 333.146 kb on + strand, within PP_5435 at 333.153 kb on + strand, within PP_5435 at 333.153 kb on + strand, within PP_5435 at 333.154 kb on - strand, within PP_5435 at 333.522 kb on + strand, within PP_0274 at 333.522 kb on + strand, within PP_0274 at 333.830 kb on - strand at 333.864 kb on - strand at 333.940 kb on + strand at 333.940 kb on + strand at 333.940 kb on + strand at 334.004 kb on + strand at 334.020 kb on + strand at 334.085 kb on - strand at 334.112 kb on + strand at 334.112 kb on + strand at 334.112 kb on + strand at 334.112 kb on + strand at 334.112 kb on + strand at 334.112 kb on + strand at 334.112 kb on + strand at 334.113 kb on - strand at 334.113 kb on - strand at 334.113 kb on - strand at 334.113 kb on - strand at 334.117 kb on + strand at 334.117 kb on + strand at 334.118 kb on - strand at 334.118 kb on - strand at 334.219 kb on + strand, within PP_0275 at 334.219 kb on + strand, within PP_0275 at 334.219 kb on + strand, within PP_0275 at 334.219 kb on + strand, within PP_0275 at 334.219 kb on + strand, within PP_0275 at 334.220 kb on - strand, within PP_0275 at 334.220 kb on - strand, within PP_0275 at 334.220 kb on - strand, within PP_0275 at 334.220 kb on - strand, within PP_0275 at 334.363 kb on + strand at 334.364 kb on - strand at 334.364 kb on - strand at 334.364 kb on - strand at 334.531 kb on - strand, within PP_0276
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 332,265 + -0.3 332,265 + +0.2 332,266 - +0.0 332,325 + +0.8 332,326 - -0.3 332,326 - -1.3 332,326 - +0.9 332,326 - +0.0 332,326 - +0.1 332,326 - -0.0 332,326 - -1.3 332,328 + +0.2 332,328 + +1.1 332,329 - -0.2 332,329 - +0.0 332,329 - +0.6 332,329 - -0.3 332,329 - -2.3 332,329 - -1.3 332,346 + -1.7 332,346 + +0.4 332,347 - -0.1 332,347 - -0.6 332,376 - +0.4 332,475 + -2.1 332,476 - +0.7 332,487 - -1.5 332,616 + PP_0273 0.67 -0.8 332,616 + PP_0273 0.67 +0.8 332,616 + PP_0273 0.67 +0.1 332,617 - PP_0273 0.67 -0.3 332,617 - PP_0273 0.67 +0.8 332,715 + -0.1 332,715 + -0.1 332,778 + +0.3 332,779 - +0.7 332,795 + +0.4 332,796 - -0.7 332,837 + +0.3 332,837 + -1.9 332,837 + -0.8 332,837 + -0.3 332,837 + +0.5 332,838 - +0.9 332,838 - +0.3 332,838 - -0.3 332,838 - +0.7 332,838 - -0.2 332,929 + PP_5435 0.19 +0.3 333,081 - PP_5435 0.62 +1.3 333,081 - PP_5435 0.62 +1.0 333,081 - PP_5435 0.62 +0.1 333,081 - PP_5435 0.62 -0.3 333,084 + PP_5435 0.63 +0.0 333,084 + PP_5435 0.63 -3.1 333,084 + PP_5435 0.63 -1.0 333,084 + PP_5435 0.63 -0.3 333,085 - PP_5435 0.63 -0.3 333,085 - PP_5435 0.63 +0.7 333,085 - PP_5435 0.63 +0.2 333,146 + PP_5435 0.80 +0.5 333,153 + PP_5435 0.82 +0.0 333,153 + PP_5435 0.82 -0.1 333,154 - PP_5435 0.82 +0.8 333,522 + PP_0274 0.56 -2.3 333,522 + PP_0274 0.56 -1.5 333,830 - -1.8 333,864 - +0.3 333,940 + -0.4 333,940 + +0.5 333,940 + -0.9 334,004 + +0.6 334,020 + +0.6 334,085 - +1.6 334,112 + -0.0 334,112 + -0.9 334,112 + -1.0 334,112 + +0.1 334,112 + +0.4 334,112 + +0.7 334,112 + +0.5 334,113 - +0.1 334,113 - -0.1 334,113 - -0.5 334,113 - -1.5 334,117 + +0.2 334,117 + -1.1 334,118 - +0.0 334,118 - +1.1 334,219 + PP_0275 0.32 +1.0 334,219 + PP_0275 0.32 -1.4 334,219 + PP_0275 0.32 -0.2 334,219 + PP_0275 0.32 -0.6 334,219 + PP_0275 0.32 +0.2 334,220 - PP_0275 0.32 +1.6 334,220 - PP_0275 0.32 -0.9 334,220 - PP_0275 0.32 +0.7 334,220 - PP_0275 0.32 +0.5 334,363 + -0.4 334,364 - -1.0 334,364 - +0.4 334,364 - -1.8 334,531 - PP_0276 0.52 +0.5
Or see this region's nucleotide sequence