Strain Fitness in Pseudomonas putida KT2440 around PP_5525

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,808,073	-		PP_2462	0.19	-0.2
2,808,073	-		PP_2462	0.19	+0.2
2,808,431	+				+1.1
2,808,431	+				-0.1
2,808,431	+				-1.0
2,808,431	+				+0.1
2,808,432	-				-0.3
2,808,480	+				+0.2
2,808,567	+				-1.2
2,808,567	+				-0.2
2,808,568	-				-0.1
2,808,693	-		PP_2463	0.55	-0.4
2,808,808	+				+0.5
2,808,809	-				+0.1
2,808,866	+				-0.4
2,808,880	+				-1.3
2,808,880	+				+0.5
2,808,890	+				+0.3
2,808,891	-				-0.5
2,808,944	-				+0.5
2,809,155	+		PP_5525	0.67	-0.4
2,809,156	-		PP_5525	0.67	+0.3
2,809,156	-		PP_5525	0.67	-0.1
2,809,156	-		PP_5525	0.67	+0.7
2,809,156	-		PP_5525	0.67	+0.8
2,809,156	-		PP_5525	0.67	+0.7
2,809,263	+				-0.2
2,809,264	-				+0.3
2,809,292	+				+0.5
2,809,292	+				-0.0
2,809,293	-				-0.2
2,809,332	-				+0.6
2,809,332	-				-0.4
2,809,389	+				+0.0
2,809,389	+				-0.0
2,809,430	+				-0.1
2,809,533	+				+0.0