Strain Fitness in Pseudomonas putida KT2440 around PP_4249

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,834,285	+		PP_4247	0.11	+0.3
4,834,568	+		PP_4247	0.62	-0.8
4,834,743	+				+0.0
4,834,746	+				+0.3
4,834,746	+				-0.8
4,834,747	-				+0.8
4,834,810	-				-0.5
4,834,810	-				+0.6
4,835,113	+				+0.3
4,835,114	-				-1.0
4,835,114	-				+0.3
4,835,114	-				+0.1
4,835,114	-				-0.6
4,835,114	-				+0.1
4,835,114	-				+0.1
4,835,114	-				-0.3
4,835,134	+				-0.1
4,835,135	-				+0.1
4,835,135	-				+0.5
4,835,178	+				+0.7
4,835,179	-				+0.2
4,835,219	+				+0.2
4,835,219	+				-0.8
4,835,219	+				+0.3
4,835,219	+				-0.3
4,835,219	+				-0.4
4,835,219	+				-0.5
4,835,252	+				+0.1
4,835,252	+				-0.3
4,835,253	-				-0.9
4,835,357	-		PP_4249	0.15	+0.7
4,835,477	-		PP_4249	0.33	-0.3
4,835,477	-		PP_4249	0.33	+0.6
4,835,516	+		PP_4249	0.38	+0.5
4,835,717	+		PP_4249	0.67	+0.2
4,835,718	-		PP_4249	0.67	+0.4
4,835,837	+		PP_4249	0.85	-0.6
4,835,837	+		PP_4249	0.85	+0.5
4,835,838	-		PP_4249	0.85	+2.0
4,835,937	+				+0.3
4,835,957	+				-1.2
4,835,958	-				-0.3
4,835,991	+				+0.5
4,835,991	+				+0.8
4,835,991	+				+0.1
4,835,991	+				-0.6
4,835,991	+				+1.1
4,835,992	-				+1.9
4,835,992	-				-0.1
4,835,992	-				+0.4
4,836,019	-				+0.1
4,836,019	-				+0.2
4,836,020	+				+0.4
4,836,020	+				+0.4
4,836,021	-				+0.4
4,836,021	-				+0.8
4,836,021	-				+0.4
4,836,021	-				-0.3
4,836,024	+				+0.6
4,836,024	+				-0.3
4,836,024	+				+0.4
4,836,024	+				+0.1
4,836,025	-				+0.1
4,836,025	-				-1.1
4,836,124	+				+0.5
4,836,173	+		PP_4250	0.13	-0.5
4,836,173	+		PP_4250	0.13	-0.3
4,836,174	-		PP_4250	0.13	-1.0
4,836,225	+		PP_4250	0.16	-0.7
4,836,226	-		PP_4250	0.16	-0.7
4,836,308	+		PP_4250	0.22	+0.1
4,836,414	+		PP_4250	0.29	+0.3
4,836,465	+		PP_4250	0.33	-1.5
4,836,466	-		PP_4250	0.33	+1.6
4,836,466	-		PP_4250	0.33	-0.5
4,836,466	-		PP_4250	0.33	-0.2
4,836,570	+		PP_4250	0.40	-0.4
4,836,607	-		PP_4250	0.43	-0.9
4,836,660	+		PP_4250	0.47	+0.0
4,836,660	+		PP_4250	0.47	-0.8
4,836,660	+		PP_4250	0.47	-0.6
4,836,660	+		PP_4250	0.47	+0.2
4,836,661	-		PP_4250	0.47	+0.1
4,836,661	-		PP_4250	0.47	-0.6
4,836,661	-		PP_4250	0.47	+0.3
4,836,661	-		PP_4250	0.47	+0.5
4,836,663	+		PP_4250	0.47	+0.8
4,836,663	+		PP_4250	0.47	+0.2
4,836,664	-		PP_4250	0.47	-0.2
4,836,666	+		PP_4250	0.47	+0.3
4,836,666	+		PP_4250	0.47	-0.2
4,836,666	+		PP_4250	0.47	+0.2
4,836,666	+		PP_4250	0.47	-0.1
4,836,667	-		PP_4250	0.47	-0.4
4,836,667	-		PP_4250	0.47	+0.6
4,836,667	-		PP_4250	0.47	+2.0
4,836,697	-		PP_4250	0.49	+2.1
4,836,697	-		PP_4250	0.49	+1.1
4,836,697	-		PP_4250	0.49	-0.6
4,836,697	-		PP_4250	0.49	+0.4
4,836,774	+		PP_4250	0.55	-0.3
4,836,774	+		PP_4250	0.55	+0.9
4,836,942	+		PP_4250	0.67	+0.9