Strain Fitness in Pseudomonas putida KT2440 around PP_3643

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
4,137,506	+		PP_3641	0.52	+0.0
4,137,516	-		PP_3641	0.52	-0.4
4,137,516	-		PP_3641	0.52	+0.8
4,137,516	-		PP_3641	0.52	+0.4
4,137,681	+		PP_3641	0.64	-0.9
4,137,681	+		PP_3641	0.64	-0.1
4,137,751	+		PP_3641	0.69	+0.4
4,137,842	+		PP_3641	0.75	+0.3
4,137,842	+		PP_3641	0.75	+0.5
4,137,842	+		PP_3641	0.75	-0.5
4,137,843	-		PP_3641	0.76	+0.2
4,137,881	+		PP_3641	0.78	+0.5
4,138,133	+				+0.7
4,138,134	-				+0.1
4,138,134	-				+0.2
4,138,211	+				-1.0
4,138,220	-				+0.1
4,138,407	+				+0.5
4,138,494	+				+0.3
4,138,661	+		PP_3643	0.33	-0.1
4,138,661	+		PP_3643	0.33	+0.0
4,138,662	-		PP_3643	0.33	+0.5
4,138,683	+		PP_3643	0.37	+1.9
4,138,865	+		PP_3643	0.75	+0.7
4,138,866	-		PP_3643	0.75	-0.8
4,138,866	-		PP_3643	0.75	+0.8
4,138,946	+				-1.7
4,138,946	+				-0.4
4,138,946	+				-0.1
4,139,045	+				-0.5
4,139,216	-		PP_3644	0.14	-0.4
4,139,216	-		PP_3644	0.14	+0.5
4,139,216	-		PP_3644	0.14	-1.1
4,139,251	+		PP_3644	0.18	-1.0
4,139,320	-		PP_3644	0.24	+0.1
4,139,320	-		PP_3644	0.24	+0.4
4,139,503	+		PP_3644	0.42	-0.4
4,139,525	-		PP_3644	0.44	+0.2
4,139,525	-		PP_3644	0.44	-0.2
4,139,824	+		PP_3644	0.73	-0.2
4,139,825	-		PP_3644	0.73	-0.7
4,139,825	-		PP_3644	0.73	-0.3
4,139,836	+		PP_3644	0.74	-0.4