Strain Fitness in Pseudomonas putida KT2440 around PP_2987

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,384,645	+		PP_2986	0.26	+0.6
3,384,645	+		PP_2986	0.26	+0.1
3,384,645	+		PP_2986	0.26	-0.0
3,384,645	+		PP_2986	0.26	-0.1
3,384,645	+		PP_2986	0.26	-0.2
3,384,646	-		PP_2986	0.27	-0.0
3,384,646	-		PP_2986	0.27	+0.3
3,384,681	+		PP_2986	0.30	-0.9
3,384,681	+		PP_2986	0.30	-0.7
3,384,681	+		PP_2986	0.30	+0.9
3,384,681	+		PP_2986	0.30	+0.3
3,384,682	-		PP_2986	0.30	+0.5
3,384,682	-		PP_2986	0.30	-0.7
3,384,682	-		PP_2986	0.30	-0.0
3,384,682	-		PP_2986	0.30	+0.2
3,384,682	-		PP_2986	0.30	-0.4
3,384,682	-		PP_2986	0.30	+0.8
3,384,702	-		PP_2986	0.32	-0.3
3,384,812	-		PP_2986	0.42	+0.8
3,384,888	+		PP_2986	0.50	-0.2
3,384,889	-		PP_2986	0.50	+0.7
3,384,889	-		PP_2986	0.50	+0.5
3,384,889	-		PP_2986	0.50	+0.2
3,384,889	-		PP_2986	0.50	-0.2
3,384,928	+		PP_2986	0.53	-0.4
3,384,928	+		PP_2986	0.53	-0.2
3,384,928	+		PP_2986	0.53	+0.2
3,384,929	-		PP_2986	0.54	+0.2
3,384,929	-		PP_2986	0.54	-0.3
3,384,960	-		PP_2986	0.56	+0.5
3,384,963	-		PP_2986	0.57	-0.2
3,384,963	-		PP_2986	0.57	-1.6
3,385,047	+		PP_2986	0.65	-0.2
3,385,047	+		PP_2986	0.65	-0.8
3,385,047	+		PP_2986	0.65	-1.2
3,385,047	+		PP_2986	0.65	-0.1
3,385,047	+		PP_2986	0.65	+0.3
3,385,047	+		PP_2986	0.65	-0.1
3,385,048	-		PP_2986	0.65	-1.0
3,385,048	-		PP_2986	0.65	-0.3
3,385,048	-		PP_2986	0.65	+0.5
3,385,063	+		PP_2986	0.66	-0.5
3,385,151	+		PP_2986	0.75	+0.2
3,385,151	+		PP_2986	0.75	+0.6
3,385,151	+		PP_2986	0.75	-0.3
3,385,151	+		PP_2986	0.75	-0.7
3,385,432	-				-0.1
3,385,441	+				+0.0
3,385,674	-		PP_2987	0.13	-0.3
3,385,822	+		PP_2987	0.46	+0.2
3,385,822	+		PP_2987	0.46	+0.3
3,385,823	-		PP_2987	0.46	-0.1
3,385,867	-		PP_2987	0.56	+0.0
3,385,983	+		PP_2987	0.82	+0.7
3,385,984	-		PP_2987	0.83	+0.6
3,385,984	-		PP_2987	0.83	+0.7
3,385,984	-		PP_2987	0.83	+0.2
3,385,984	-		PP_2987	0.83	+1.6
3,386,094	-				-0.2
3,386,263	+		PP_2988	0.10	-0.1
3,386,263	+		PP_2988	0.10	-0.9
3,386,264	-		PP_2988	0.11	-0.8
3,386,335	+		PP_2988	0.18	+0.4
3,386,336	-		PP_2988	0.18	+0.2
3,386,345	-		PP_2988	0.18	-0.0
3,386,396	-		PP_2988	0.24	+0.3
3,386,396	-		PP_2988	0.24	+0.5
3,386,400	-		PP_2988	0.24	+0.7
3,386,699	+		PP_2988	0.53	-0.0
3,386,699	+		PP_2988	0.53	-0.3
3,386,700	-				+0.5
3,386,700	-		PP_2988	0.53	-0.4
3,386,705	+		PP_2988	0.54	+0.8
3,386,705	+		PP_2988	0.54	+0.3
3,386,705	+		PP_2988	0.54	+0.6
3,386,706	-		PP_2988	0.54	-0.1
3,386,706	-		PP_2988	0.54	+0.6
3,386,758	-		PP_2988	0.59	-0.7
3,386,793	+		PP_2988	0.63	+0.2
3,386,815	+		PP_2988	0.65	-0.2
3,386,816	-		PP_2988	0.65	+0.4
3,386,998	-		PP_2988	0.83	-1.4