Strain Fitness in Pseudomonas putida KT2440 around PP_2950

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,353,794	-				+0.3
3,353,794	-				-1.2
3,353,923	-		PP_2949	0.19	-0.2
3,353,967	+		PP_2949	0.24	-1.1
3,353,968	-		PP_2949	0.24	-0.1
3,354,027	+		PP_2949	0.31	+0.3
3,354,027	+		PP_2949	0.31	+0.0
3,354,028	-		PP_2949	0.31	-0.4
3,354,028	-		PP_2949	0.31	+0.3
3,354,028	-		PP_2949	0.31	+0.2
3,354,028	-		PP_2949	0.31	-0.2
3,354,073	+		PP_2949	0.37	+0.0
3,354,245	+		PP_2949	0.56	-0.4
3,354,245	+		PP_2949	0.56	-0.9
3,354,378	+		PP_2949	0.72	+0.9
3,354,407	+		PP_2949	0.75	+0.3
3,354,620	+				-0.3
3,354,621	-				-0.1
3,354,654	+				+1.0
3,354,655	-				-1.3
3,354,655	-				+0.2
3,354,656	+				+0.4
3,354,657	-				+0.6
3,354,682	+				+0.6
3,354,682	+				+0.9
3,354,683	-				+0.2
3,354,683	-				+0.4
3,354,683	-				-0.7
3,354,683	-				+0.1
3,354,708	-				+0.5
3,354,708	-				-0.6
3,354,712	-				+0.9
3,354,712	-				+0.7
3,354,736	+				+0.0
3,354,938	-		PP_2950	0.43	+0.4
3,355,089	-		PP_2950	0.74	+1.1
3,355,089	-		PP_2950	0.74	-0.1
3,355,089	-		PP_2950	0.74	+2.0
3,355,090	+		PP_2950	0.74	-0.5
3,355,090	+		PP_2950	0.74	+0.5
3,355,252	+				+0.3
3,355,252	+				-0.3
3,355,253	-				-0.5
3,355,440	-		PP_2951	0.31	+0.3
3,355,529	-		PP_2951	0.47	-0.2
3,355,529	-		PP_2951	0.47	-0.3
3,355,653	-		PP_2951	0.68	-0.2
3,355,653	-		PP_2951	0.68	+0.0
3,355,653	-		PP_2951	0.68	-1.0
3,355,655	-		PP_2951	0.69	-0.5
3,355,683	-		PP_2951	0.74	+0.2
3,355,693	+		PP_2951	0.75	-0.2
3,355,783	-				+0.4
3,355,787	-				+0.7
3,355,838	-				-1.0
3,355,845	+				-0.3
3,355,846	-				-0.5
3,356,011	+				-0.3
3,356,141	+				-0.4
3,356,141	+		PP_2952	0.21	+0.8
3,356,141	+		PP_2952	0.21	+0.1
3,356,141	+		PP_2952	0.21	-0.8
3,356,141	+		PP_2952	0.21	-0.6