Strain Fitness in Pseudomonas putida KT2440 around PP_2836

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,236,577	+				-0.1
3,236,578	-				-0.2
3,236,595	+				-0.3
3,236,596	-				-0.1
3,236,596	-				+0.4
3,236,652	+		PP_2835	0.14	-0.1
3,236,745	-				+0.7
3,236,759	+		PP_2835	0.24	+1.8
3,236,826	+		PP_2835	0.31	-0.1
3,236,865	-		PP_2835	0.35	+0.2
3,237,391	-		PP_2835	0.85	+0.0
3,237,522	+				+0.0
3,237,700	+		PP_2836	0.11	+0.9
3,237,700	+		PP_2836	0.11	+0.3
3,237,700	+		PP_2836	0.11	+1.2
3,237,935	+		PP_2836	0.31	-0.5
3,237,936	-		PP_2836	0.31	-0.3
3,238,443	+		PP_2836	0.72	+0.1
3,238,443	+		PP_2836	0.72	+0.5
3,238,851	+				-0.7
3,238,854	+				-0.6
3,238,854	+				-0.3
3,238,854	+				+0.1
3,238,855	-				-0.3
3,238,855	-				+0.5
3,238,858	-				+0.4
3,238,858	-				-0.3
3,238,858	-				-0.7
3,238,888	+				+0.2
3,238,888	+				+0.9
3,238,899	+				-0.1
3,239,041	+		PP_2837	0.13	+0.2
3,239,042	-		PP_2837	0.13	+0.2
3,239,396	+				-0.3
3,239,396	+		PP_2837	0.40	-0.6
3,239,422	+		PP_2837	0.42	+0.1
3,239,423	-		PP_2837	0.42	-0.3
3,239,423	-		PP_2837	0.42	+0.0
3,239,423	-		PP_2837	0.42	-0.0
3,239,521	+		PP_2837	0.50	+0.3
3,239,521	+		PP_2837	0.50	+0.3
3,239,560	-		PP_2837	0.53	+0.9
3,239,596	+		PP_2837	0.55	-0.1
3,239,597	-		PP_2837	0.55	+0.2
3,239,597	-		PP_2837	0.55	-0.2
3,239,597	-		PP_2837	0.55	-0.3
3,239,597	-		PP_2837	0.55	+0.2
3,239,662	+		PP_2837	0.60	+0.2
3,239,663	-		PP_2837	0.60	-0.4
3,239,663	-		PP_2837	0.60	-2.6
3,239,692	+		PP_2837	0.63	-0.6
3,239,693	-		PP_2837	0.63	-0.4
3,239,748	-		PP_2837	0.67	+0.7
3,239,748	-		PP_2837	0.67	-0.2