Strain Fitness in Pseudomonas putida KT2440 around PP_2813

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,207,969	+		PP_2812	0.67	-0.2
3,207,969	+		PP_2812	0.67	-0.1
3,207,970	-		PP_2812	0.67	+0.1
3,208,020	+		PP_2812	0.69	-0.0
3,208,099	-		PP_2812	0.72	-1.3
3,208,226	+		PP_2812	0.78	-0.4
3,208,226	+		PP_2812	0.78	+0.4
3,208,269	+		PP_2812	0.79	+0.1
3,208,269	+		PP_2812	0.79	-0.6
3,208,269	+		PP_2812	0.79	+0.3
3,208,270	-		PP_2812	0.79	+0.5
3,208,270	-		PP_2812	0.79	+0.4
3,208,270	-		PP_2812	0.79	-0.2
3,208,270	-		PP_2812	0.79	-0.8
3,208,276	-		PP_2812	0.80	+0.9
3,208,276	-		PP_2812	0.80	-0.3
3,208,412	+		PP_2812	0.85	-0.3
3,208,413	-		PP_2812	0.85	+0.3
3,208,413	-		PP_2812	0.85	+0.1
3,208,413	-		PP_2812	0.85	-0.7
3,208,413	-		PP_2812	0.85	-0.4
3,208,413	-		PP_2812	0.85	+0.5
3,208,413	-		PP_2812	0.85	+0.2
3,208,464	+		PP_2812	0.87	-1.2
3,208,470	+		PP_2812	0.88	-0.2
3,208,470	+		PP_2812	0.88	+0.1
3,208,471	-		PP_2812	0.88	+0.1
3,208,471	-		PP_2812	0.88	+1.1
3,208,727	+				+0.8
3,209,332	+		PP_2813	0.58	+0.2
3,209,357	+		PP_2813	0.60	-0.4
3,209,358	-		PP_2813	0.60	+0.6
3,209,358	-		PP_2813	0.60	+0.8
3,209,358	-		PP_2813	0.60	+1.4
3,209,358	-		PP_2813	0.60	+0.6
3,209,694	-				-1.7
3,209,699	+				+0.9
3,209,700	-				+0.4
3,209,870	-				+0.4
3,209,887	+				-0.6
3,209,887	+				-0.1
3,209,891	+				-0.0
3,209,891	+				-0.6
3,209,892	-				-0.7
3,209,892	-				+0.1
3,209,892	-				+0.3
3,210,002	-		PP_2814	0.17	-0.1
3,210,058	+		PP_2814	0.23	+0.2
3,210,061	+		PP_2814	0.24	-0.2
3,210,062	-		PP_2814	0.24	-0.2
3,210,062	-		PP_2814	0.24	-0.2
3,210,305	-		PP_2814	0.52	+0.2
3,210,404	-		PP_2814	0.63	+0.0