Strain Fitness in Pseudomonas putida KT2440 around PP_2773

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
3,156,621	-		PP_2772	0.29	-2.2
3,156,635	+		PP_2772	0.31	+0.2
3,156,636	-		PP_2772	0.31	+0.2
3,156,636	-		PP_2772	0.31	-0.1
3,156,636	-		PP_2772	0.31	+0.3
3,156,636	-		PP_2772	0.31	-1.0
3,156,733	-		PP_2772	0.39	+0.2
3,157,066	+		PP_2772	0.67	-1.0
3,157,067	-		PP_2772	0.67	+0.2
3,157,171	+		PP_2772	0.76	+0.1
3,157,536	+		PP_2773	0.14	+0.7
3,157,537	-		PP_2773	0.14	+0.3
3,157,730	-				-0.6
3,157,732	-				+0.2
3,157,732	-				-0.9
3,157,732	-				+0.3
3,157,732	-				-0.9
3,157,993	+				-0.7
3,157,994	-				-0.2
3,157,994	-				+0.1
3,157,998	-				-0.1
3,158,077	+				-0.4
3,158,111	+				+0.6
3,158,198	-		PP_2774	0.10	+2.1
3,158,308	+		PP_2774	0.16	-0.1