Strain Fitness in Pseudomonas putida KT2440 around PP_2261

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,578,828	+		PP_2260	0.22	+1.1
2,578,846	+		PP_2260	0.23	+0.4
2,579,083	+		PP_2260	0.45	+1.3
2,579,084	-		PP_2260	0.45	+1.1
2,579,221	-				+0.7
2,579,252	-		PP_2260	0.60	-0.0
2,579,252	-		PP_2260	0.60	+0.8
2,579,323	-		PP_2260	0.67	+0.6
2,579,323	-		PP_2260	0.67	-0.3
2,579,340	-		PP_2260	0.68	+1.7
2,579,405	-		PP_2260	0.74	+0.7
2,579,722	-				+0.3
2,579,722	-				+0.4
2,579,722	-				+0.2
2,579,752	-				+0.4
2,579,752	-				+0.3
2,579,796	+		PP_2261	0.10	-0.1
2,579,797	-		PP_2261	0.10	+0.4
2,579,844	-		PP_2261	0.14	+0.6
2,579,961	+		PP_2261	0.25	+0.2
2,579,961	+		PP_2261	0.25	+1.4
2,579,961	+		PP_2261	0.25	+0.7
2,579,962	-		PP_2261	0.25	+0.4
2,580,270	+		PP_2261	0.53	-0.0
2,580,271	-				+0.0
2,580,271	-		PP_2261	0.53	-0.0
2,580,271	-		PP_2261	0.53	-0.2
2,580,387	-		PP_2261	0.64	+0.3
2,580,399	+		PP_2261	0.65	+0.1
2,580,565	+		PP_2261	0.80	+0.3
2,580,566	-		PP_2261	0.80	+0.4
2,580,566	-		PP_2261	0.80	-0.1
2,580,566	-		PP_2261	0.80	+1.0
2,580,626	+		PP_2261	0.86	+0.4
2,580,626	+		PP_2261	0.86	+1.1
2,580,627	-		PP_2261	0.86	+0.8
2,580,631	-		PP_2261	0.86	+0.7
2,580,747	+				+0.5
2,580,748	-				+0.5
2,580,748	-				-0.4
2,580,748	-				-0.0
2,580,748	-				+1.7
2,580,748	-				-0.1
2,580,748	-				+0.2
2,580,918	-		PP_2262	0.16	+0.4
2,580,995	+				+1.2
2,580,995	+		PP_2262	0.25	+0.2
2,581,035	+		PP_2262	0.30	-0.6
2,581,035	+		PP_2262	0.30	+0.0
2,581,035	+		PP_2262	0.30	+0.2
2,581,035	+		PP_2262	0.30	-0.9
2,581,036	-		PP_2262	0.30	+0.8
2,581,036	-		PP_2262	0.30	+0.2
2,581,036	-		PP_2262	0.30	+0.2
2,581,036	-		PP_2262	0.30	+0.3
2,581,136	-		PP_2262	0.41	+0.4
2,581,144	+		PP_2262	0.42	+0.1
2,581,205	+		PP_2262	0.49	+0.3
2,581,205	+		PP_2262	0.49	+0.7
2,581,205	+		PP_2262	0.49	-0.2
2,581,205	+		PP_2262	0.49	-1.1
2,581,212	-		PP_2262	0.50	-0.4
2,581,295	+		PP_2262	0.60	+0.7
2,581,296	-		PP_2262	0.60	+0.3
2,581,325	+		PP_2262	0.63	+0.4
2,581,326	-		PP_2262	0.63	-0.7
2,581,326	-		PP_2262	0.63	-0.7
2,581,329	-		PP_2262	0.63	+0.0
2,581,451	+		PP_2262	0.78	-0.3
2,581,452	-		PP_2262	0.78	+0.7
2,581,526	-		PP_2262	0.86	+0.2
2,581,526	-		PP_2262	0.86	+0.2
2,581,577	+				-0.4
2,581,578	-				+0.1
2,581,643	+				-0.8
2,581,643	+				+1.9
2,581,643	+				+1.0
2,581,643	+				+1.2
2,581,683	-				+0.4
2,581,710	-				-0.7