Strain Fitness in Pseudomonas putida KT2440 around PP_2260

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,577,618	+		PP_2259	0.56	+0.7
2,577,657	+		PP_2259	0.58	+0.0
2,577,872	-		PP_2259	0.71	+0.3
2,577,886	-		PP_2259	0.71	+0.7
2,577,949	+		PP_2259	0.75	+0.5
2,577,950	-		PP_2259	0.75	+0.3
2,577,950	-		PP_2259	0.75	+0.1
2,578,149	+		PP_2259	0.86	+0.2
2,578,157	-		PP_2259	0.87	-0.3
2,578,157	-		PP_2259	0.87	-0.2
2,578,183	+		PP_2259	0.88	-0.3
2,578,183	+		PP_2259	0.88	-0.0
2,578,183	+		PP_2259	0.88	-0.2
2,578,183	+		PP_2259	0.88	-0.2
2,578,192	-		PP_2259	0.89	-0.3
2,578,828	+		PP_2260	0.22	+1.1
2,578,846	+		PP_2260	0.23	+0.4
2,579,083	+		PP_2260	0.45	+1.3
2,579,084	-		PP_2260	0.45	+1.1
2,579,221	-				+0.7
2,579,252	-		PP_2260	0.60	-0.0
2,579,252	-		PP_2260	0.60	+0.8
2,579,323	-		PP_2260	0.67	+0.6
2,579,323	-		PP_2260	0.67	-0.3
2,579,340	-		PP_2260	0.68	+1.7
2,579,405	-		PP_2260	0.74	+0.7
2,579,722	-				+0.3
2,579,722	-				+0.4
2,579,722	-				+0.2
2,579,752	-				+0.4
2,579,752	-				+0.3
2,579,796	+		PP_2261	0.10	-0.1
2,579,797	-		PP_2261	0.10	+0.4
2,579,844	-		PP_2261	0.14	+0.6
2,579,961	+		PP_2261	0.25	+0.2
2,579,961	+		PP_2261	0.25	+1.4
2,579,961	+		PP_2261	0.25	+0.7
2,579,962	-		PP_2261	0.25	+0.4
2,580,270	+		PP_2261	0.53	-0.0
2,580,271	-				+0.0
2,580,271	-		PP_2261	0.53	-0.0
2,580,271	-		PP_2261	0.53	-0.2
2,580,387	-		PP_2261	0.64	+0.3
2,580,399	+		PP_2261	0.65	+0.1
2,580,565	+		PP_2261	0.80	+0.3
2,580,566	-		PP_2261	0.80	+0.4
2,580,566	-		PP_2261	0.80	-0.1
2,580,566	-		PP_2261	0.80	+1.0
2,580,626	+		PP_2261	0.86	+0.4
2,580,626	+		PP_2261	0.86	+1.1
2,580,627	-		PP_2261	0.86	+0.8
2,580,631	-		PP_2261	0.86	+0.7