Strain Fitness in Pseudomonas putida KT2440 around PP_2175

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
2,479,666	-		PP_2173	0.54	-0.1
2,479,694	-		PP_2173	0.58	+0.3
2,479,907	+		PP_2173	0.82	+0.5
2,480,003	+				+0.2
2,480,004	-				-0.2
2,480,033	+				-0.7
2,480,033	+				-0.4
2,480,034	-				+0.6
2,480,034	-				-0.2
2,480,037	+				+0.1
2,480,037	+				+0.1
2,480,037	+				+0.2
2,480,038	-				-0.1
2,480,038	-				+0.8
2,480,038	-				+1.1
2,480,094	+				-0.2
2,480,139	+				-0.5
2,480,169	+				+0.3
2,480,194	-				-0.9
2,480,194	-				+0.5
2,480,252	-		PP_2174	0.21	-1.1
2,480,399	+		PP_2174	0.59	+0.7
2,480,400	-		PP_2174	0.59	+0.3
2,480,507	+		PP_2174	0.86	-0.2
2,480,507	+		PP_2174	0.86	+0.4
2,480,507	+		PP_2174	0.86	+0.4
2,480,507	+				+0.4
2,480,508	-		PP_2174	0.87	+0.3
2,480,508	-		PP_2174	0.87	-0.0
2,480,508	-		PP_2174	0.87	+0.4
2,480,508	-		PP_2174	0.87	-0.4
2,480,508	-		PP_2174	0.87	+0.5
2,480,514	+		PP_2174	0.88	-0.3
2,480,514	+		PP_2174	0.88	-0.3
2,480,515	-		PP_2174	0.88	+0.1
2,480,547	+				-1.7
2,480,547	+				+0.2
2,480,548	-				-0.7
2,480,694	+				-0.6
2,480,694	+				-0.1
2,480,694	+				+0.1
2,480,695	-				+0.6
2,480,695	-				+0.1
2,480,755	-		PP_2175	0.16	-0.1
2,480,989	-		PP_2175	0.49	-0.5
2,481,030	+		PP_2175	0.55	+0.6
2,481,030	+		PP_2175	0.55	+0.1
2,481,031	-		PP_2175	0.55	+0.8
2,481,199	+		PP_2175	0.79	-0.1
2,481,199	+		PP_2175	0.79	+0.5
2,481,199	+		PP_2175	0.79	+0.9
2,481,199	+		PP_2175	0.79	+0.4
2,481,200	-		PP_2175	0.79	+0.1
2,481,302	-				-0.6
2,481,339	-				-0.2
2,481,363	+				-0.4
2,481,378	+				+1.1
2,481,387	+				+0.5
2,481,424	+				+0.0
2,481,443	-				+0.9
2,481,447	+				-0.4
2,481,447	+				+0.4
2,481,447	+				-0.5
2,481,448	-				+0.3
2,481,448	-				-0.5
2,481,451	+				+0.1
2,481,491	+				-0.1
2,481,491	+				+0.8
2,481,531	+				+0.2
2,481,532	-				-0.9
2,481,532	-				+0.5
2,481,532	-				+0.7
2,481,541	+		PP_2176	0.10	+0.5
2,481,541	+		PP_2176	0.10	+0.6
2,481,628	+		PP_2176	0.20	+0.7
2,481,628	+		PP_2176	0.20	-0.2
2,481,628	+		PP_2176	0.20	+0.0
2,481,897	+		PP_2176	0.48	-0.5
2,481,957	-		PP_2176	0.55	+0.5
2,481,962	+		PP_2176	0.55	-0.4
2,481,962	+		PP_2176	0.55	+0.8
2,482,209	-		PP_2176	0.82	-0.0
2,482,209	-		PP_2176	0.82	+0.2
2,482,298	+				+0.3
2,482,298	+				-0.5
2,482,298	+				-0.1
2,482,299	-				+0.4