Strain Fitness in Pseudomonas putida KT2440 around PP_1535

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,738,868	+		PP_1532	0.71	-0.5
1,738,924	+		PP_1532	0.76	-0.2
1,738,924	+		PP_1532	0.76	+0.6
1,738,924	+		PP_1532	0.76	-0.1
1,739,099	-				+0.4
1,739,099	-				-0.0
1,739,104	+				-0.0
1,739,104	+				-0.3
1,739,105	-				-1.0
1,739,107	+				+0.0
1,739,107	+				+0.1
1,739,107	+				-0.2
1,739,107	+				-0.5
1,739,108	-				+0.2
1,739,108	-				-0.4
1,739,108	-				-0.1
1,739,108	-				+0.1
1,739,108	-				+0.3
1,739,120	+				+0.8
1,739,141	-				+0.5
1,739,155	-				+0.4
1,739,214	+		PP_1533	0.17	-0.7
1,739,285	+		PP_1533	0.46	-0.5
1,739,285	+		PP_1533	0.46	+0.0
1,739,285	+		PP_1533	0.46	+0.3
1,739,285	+		PP_1533	0.46	+0.9
1,739,285	+		PP_1533	0.46	+1.5
1,739,285	+		PP_1533	0.46	-0.3
1,739,285	+		PP_1533	0.46	+0.0
1,739,285	+		PP_1533	0.46	-0.2
1,739,285	+		PP_1533	0.46	-0.9
1,739,286	-		PP_1533	0.47	+1.6
1,739,286	-		PP_1533	0.47	+0.7
1,739,286	-		PP_1533	0.47	+0.3
1,739,286	-		PP_1533	0.47	-0.8
1,739,286	-		PP_1533	0.47	+0.0
1,739,286	-		PP_1533	0.47	+0.3
1,739,288	+		PP_1533	0.47	+0.7
1,739,288	+		PP_1533	0.47	-0.6
1,739,288	+		PP_1533	0.47	+0.0
1,739,288	+		PP_1533	0.47	-0.4
1,739,288	+		PP_1533	0.47	+0.2
1,739,288	+		PP_1533	0.47	+1.1
1,739,289	-		PP_1533	0.48	-1.6
1,739,289	-		PP_1533	0.48	-0.8
1,739,289	-		PP_1533	0.48	-0.3
1,739,289	-		PP_1533	0.48	-0.3
1,739,305	+		PP_1533	0.54	-1.0
1,739,458	-				-0.1
1,739,464	+				+1.0
1,739,464	+				+0.2
1,739,465	-				-1.7
1,739,558	+		PP_1534	0.34	-0.2
1,739,558	+		PP_1534	0.34	+0.1
1,739,656	+		PP_1534	0.65	-0.6
1,739,656	+		PP_1534	0.65	-0.6
1,739,656	+		PP_1534	0.65	+1.4
1,739,672	+		PP_1534	0.70	+0.5
1,739,672	+		PP_1534	0.70	+0.3
1,739,672	+		PP_1534	0.70	-0.3
1,739,772	+				-0.4
1,739,772	+				+0.0
1,739,772	+				+0.5
1,739,772	+				+0.0
1,739,772	+				+0.3
1,739,773	-				-0.1
1,739,811	+				-0.2
1,739,931	+		PP_1535	0.23	+0.2
1,739,931	+		PP_1535	0.23	+0.3
1,739,931	+		PP_1535	0.23	+0.9
1,739,932	-		PP_1535	0.23	+0.7
1,739,932	-		PP_1535	0.23	-0.5
1,739,932	-		PP_1535	0.23	-0.0
1,740,046	+		PP_1535	0.48	+1.9
1,740,447	+		PP_1536	0.38	-0.6
1,740,476	+		PP_1536	0.45	-1.2
1,740,517	-		PP_1536	0.56	+0.5
1,740,600	-		PP_1536	0.78	-0.3
1,740,665	+				+0.2
1,740,734	+		PP_1537	0.23	+0.6
1,740,734	+		PP_1537	0.23	-1.5
1,740,799	+		PP_1537	0.51	-0.1
1,740,799	+		PP_1537	0.51	-0.6
1,740,799	+		PP_1537	0.51	+0.2
1,740,799	+		PP_1537	0.51	+0.3
1,740,799	+		PP_1537	0.51	+0.6
1,740,800	-		PP_1537	0.52	-1.8
1,740,800	-		PP_1537	0.52	-0.2
1,740,801	+		PP_1537	0.52	-0.4
1,740,802	-		PP_1537	0.53	-1.0
1,740,840	+		PP_1537	0.69	+0.4
1,740,849	+		PP_1537	0.73	+0.2
1,740,873	-		PP_1537	0.84	+0.0
1,740,916	+				-0.5
1,740,916	+				+0.7
1,740,916	+				-0.2
1,740,916	+				+0.2
1,740,916	+				-0.8
1,740,916	+				+0.4
1,740,917	-				-0.1
1,740,917	-				+0.1
1,740,917	-				-0.3
1,740,917	-				-0.6
1,740,957	-		PP_5472	0.20	-0.3
1,740,957	-		PP_5472	0.20	-0.5
1,741,050	+		PP_5472	0.56	-0.8
1,741,050	+		PP_5472	0.56	+1.0
1,741,050	+		PP_5472	0.56	-0.5
1,741,051	-		PP_5472	0.56	+0.3
1,741,051	-		PP_5472	0.56	+0.5
1,741,051	-		PP_5472	0.56	+0.1
1,741,054	+		PP_5472	0.57	+0.3
1,741,054	+		PP_5472	0.57	+0.3
1,741,055	-		PP_5472	0.58	-0.7
1,741,055	-		PP_5472	0.58	-1.0
1,741,063	-		PP_5472	0.61	+0.7