Strain Fitness in Pseudomonas putida KT2440 around PP_1494

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,698,389	+		PP_1493	0.13	-0.5
1,698,389	+		PP_1493	0.13	-1.1
1,698,501	+		PP_1493	0.24	+1.5
1,698,502	-		PP_1493	0.25	+0.8
1,698,917	+		PP_1493	0.65	-1.4
1,698,917	+		PP_1493	0.65	-0.6
1,698,917	+		PP_1493	0.65	-1.0
1,698,954	-		PP_1493	0.69	-1.0
1,699,042	+		PP_1493	0.78	-0.7
1,699,043	-		PP_1493	0.78	+0.5
1,699,168	+				+0.6
1,699,274	+				-0.1
1,699,715	-		PP_1494	0.40	-0.3
1,699,729	+		PP_1494	0.41	+0.1
1,699,730	-		PP_1494	0.41	+0.5
1,699,730	-		PP_1494	0.41	+0.6
1,699,730	-		PP_1494	0.41	+0.4
1,699,946	-		PP_1494	0.63	-0.6
1,699,949	+		PP_1494	0.63	+0.5
1,699,958	-		PP_1494	0.64	-0.2
1,699,958	-		PP_1494	0.64	+0.7
1,700,022	+		PP_1494	0.70	+0.5
1,700,167	-		PP_1494	0.85	+2.3
1,700,185	-		PP_1494	0.86	+0.4
1,700,278	+				+0.6
1,700,279	-				+0.7
1,700,374	+				+0.0
1,700,374	+				-0.3
1,700,375	-				-1.0
1,700,416	+				-0.7
1,700,416	+				-0.8