Strain Fitness in Pseudomonas putida KT2440 around PP_1176

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,349,545	-				+0.3
1,349,568	-				-0.8
1,349,599	+				-0.8
1,349,709	+				+0.1
1,349,710	-				-0.3
1,349,710	-				-0.8
1,349,774	+				+0.4
1,349,774	+				+0.3
1,349,803	+				+0.1
1,349,804	-				+0.5
1,349,910	-				+0.4
1,349,910	-				+1.0
1,349,911	+				+0.1
1,350,106	-				+0.3
1,350,106	-				+0.3
1,350,174	+				-0.2
1,350,277	+				+0.4
1,350,277	+				-0.1
1,350,278	-				-0.0
1,350,278	-				-0.1
1,350,321	+				+0.2
1,350,321	+				+0.5
1,350,321	+				-0.3
1,350,322	-				+0.2
1,350,322	-				+1.0
1,350,322	-				+0.0
1,350,322	-				+1.5
1,350,387	-				-0.3
1,350,400	+				-1.0
1,350,401	-				-0.2
1,350,401	-				-1.0
1,350,401	-				+0.3
1,350,454	+		PP_1176	0.41	+0.0
1,350,455	-		PP_1176	0.41	+1.9
1,350,487	+		PP_1176	0.65	+0.7