Strain Fitness in Pseudomonas putida KT2440 around PP_1138

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
1,302,414	-		PP_1136	0.89	-0.1
1,302,414	-		PP_1136	0.89	-0.9
1,302,414	-		PP_1136	0.89	+0.8
1,302,414	-		PP_1136	0.89	-0.2
1,302,442	+				+0.0
1,302,442	+				+0.9
1,302,442	+				+0.2
1,302,443	-				+0.2
1,302,446	+				-0.1
1,302,446	+				+2.6
1,302,446	+				-0.9
1,302,447	-				+0.3
1,302,447	-				+0.5
1,302,496	-				-0.3
1,302,515	+				+0.3
1,302,522	+				+0.2
1,302,523	-				+0.1
1,302,523	-				-0.2
1,302,551	-				+0.1
1,302,586	+				+0.4
1,302,586	+				-0.7
1,302,587	-				-0.4
1,302,596	+				+1.3
1,302,662	+				-0.5
1,302,663	-				-0.9
1,302,663	-				+0.3
1,302,663	-				-0.0
1,302,663	-				+0.5
1,302,667	+				-0.2
1,302,667	+				-0.0
1,302,667	+				+1.1
1,302,667	+				+0.4
1,302,667	+				-0.0
1,302,668	-				+0.7
1,302,668	-				-0.6
1,302,671	+				-0.2
1,302,671	+				+0.4
1,302,671	+				+1.2
1,302,671	+				+0.2
1,302,672	-				-0.1
1,302,672	-				-0.5
1,302,672	-				+1.0
1,302,672	-				-1.1
1,302,672	-				-0.8
1,302,688	-				+0.4
1,302,699	-				-0.4
1,302,765	+		PP_1137	0.13	+0.0
1,302,765	+		PP_1137	0.13	+0.0
1,302,765	+		PP_1137	0.13	-0.3
1,302,996	+		PP_1137	0.46	+0.2
1,302,996	+		PP_1137	0.46	-0.3
1,302,996	+		PP_1137	0.46	-1.1
1,302,997	-		PP_1137	0.46	-0.3
1,302,997	-		PP_1137	0.46	-0.3
1,302,997	-		PP_1137	0.46	+0.2
1,303,050	+		PP_1137	0.54	-0.3
1,303,051	-		PP_1137	0.54	+0.6
1,303,197	+		PP_1137	0.75	-0.1
1,303,197	+		PP_1137	0.75	+0.1
1,303,197	+		PP_1137	0.75	+1.2
1,303,198	-		PP_1137	0.75	+0.0
1,303,198	-		PP_1137	0.75	+0.0
1,303,198	-		PP_1137	0.75	-0.2
1,303,198	-		PP_1137	0.75	-0.2
1,303,377	+				+0.3
1,303,377	+				+0.1
1,303,378	-				-0.8
1,303,378	-				-0.1
1,303,392	+				+0.2
1,303,393	-				-0.1
1,303,393	-				+0.5
1,303,475	-		PP_1138	0.13	+0.7
1,303,696	+		PP_1138	0.42	+0.8
1,303,738	-		PP_1138	0.47	+0.2
1,303,980	+		PP_1138	0.79	+0.6
1,303,980	+		PP_1138	0.79	-0.0
1,303,981	-		PP_1138	0.79	+0.3
1,304,172	+				-0.3
1,304,172	+				+0.3
1,304,601	-		PP_1139	0.37	-0.3
1,304,630	+		PP_1139	0.39	-0.4
1,304,630	+		PP_1139	0.39	+0.3
1,304,630	+		PP_1139	0.39	-0.4
1,304,630	+		PP_1139	0.39	+0.8
1,304,630	+		PP_1139	0.39	+0.6
1,304,630	+		PP_1139	0.39	+0.4
1,304,631	-		PP_1139	0.39	-0.5
1,304,631	-		PP_1139	0.39	+0.4
1,304,631	-		PP_1139	0.39	+0.8
1,304,631	-		PP_1139	0.39	-0.2
1,304,631	-		PP_1139	0.39	+0.0
1,304,631	-		PP_1139	0.39	+1.0
1,304,761	-		PP_1139	0.49	+0.2
1,304,814	-		PP_1139	0.54	-0.3
1,304,814	-		PP_1139	0.54	-0.7
1,304,814	-		PP_1139	0.54	-0.2
1,304,814	-		PP_1139	0.54	-0.2
1,304,814	-		PP_1139	0.54	-0.1
1,304,916	-		PP_1139	0.62	+0.4
1,304,933	+		PP_1139	0.63	+0.0
1,304,933	+		PP_1139	0.63	+0.5
1,304,933	+		PP_1139	0.63	+0.3
1,304,934	-		PP_1139	0.63	-0.3
1,304,934	-		PP_1139	0.63	-0.1
1,304,934	-		PP_1139	0.63	+0.0
1,304,934	-		PP_1139	0.63	+0.3
1,304,939	+		PP_1139	0.64	+0.3
1,304,940	-		PP_1139	0.64	+0.4
1,304,954	+		PP_1139	0.65	+0.5
1,304,955	-		PP_1139	0.65	-0.1
1,304,955	-		PP_1139	0.65	+0.4
1,304,955	-		PP_1139	0.65	+0.9
1,304,955	-		PP_1139	0.65	-0.2
1,304,955	-		PP_1139	0.65	+0.2
1,304,955	-		PP_1139	0.65	+0.6
1,305,004	-		PP_1139	0.69	+1.3
1,305,029	+		PP_1139	0.71	-1.4
1,305,030	-		PP_1139	0.71	-0.1
1,305,086	-		PP_1139	0.75	-0.2
1,305,119	+		PP_1139	0.78	-0.8
1,305,119	+		PP_1139	0.78	+0.5
1,305,119	+		PP_1139	0.78	+0.5
1,305,119	+		PP_1139	0.78	+0.7
1,305,119	+		PP_1139	0.78	+1.2
1,305,120	-		PP_1139	0.78	+1.5
1,305,120	-		PP_1139	0.78	-0.9
1,305,120	-		PP_1139	0.78	+0.1
1,305,120	-		PP_1139	0.78	+0.9
1,305,120	-		PP_1139	0.78	+0.4