Strain Fitness in Pseudomonas putida KT2440 around PP_0138

Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
145,324	+		PP_0137	0.42	-0.7
145,380	-		PP_0137	0.46	+0.8
145,380	-		PP_0137	0.46	-0.5
145,380	-		PP_0137	0.46	-0.3
145,475	+		PP_0137	0.53	+0.3
145,475	+		PP_0137	0.53	+0.5
145,475	+		PP_0137	0.53	+1.3
145,476	-		PP_0137	0.53	-0.7
145,476	-		PP_0137	0.53	+0.9
145,506	+		PP_0137	0.56	-0.3
145,586	+		PP_0137	0.62	+1.4
145,586	+		PP_0137	0.62	-0.1
145,643	+		PP_0137	0.66	-0.8
145,701	+		PP_0137	0.70	-0.7
145,702	-		PP_0137	0.70	+0.6
145,718	+		PP_0137	0.72	+0.2
145,719	-		PP_0137	0.72	-0.1
145,754	+		PP_0137	0.74	+0.1
145,754	+		PP_0137	0.74	-0.2
145,842	+		PP_0137	0.81	+0.1
145,842	+		PP_0137	0.81	-1.2
145,943	-		PP_0137	0.88	+0.2
145,943	-		PP_0137	0.88	+2.0
146,006	+				-0.3
146,006	+				-0.9
146,006	+				+0.3
146,007	-				+0.8
146,007	-				-0.2
146,007	-				+0.4
146,030	+				+0.7
146,031	-				+0.2
146,031	-				+0.2
146,033	+				-0.9
146,034	-				-0.5
146,034	-				+0.8
146,067	+				+0.8
146,067	+				+1.2
146,204	+				-0.4
146,238	+				+1.3
146,238	+				+0.7
146,238	+				+1.0
146,238	+				+1.9
146,238	+				+0.9
146,239	-				+0.9
146,239	-				+2.2
146,239	-				+0.5
146,239	-				+0.6
146,239	-				+1.2
146,239	-				+0.7
146,239	-				+1.7
146,585	-		PP_0138	0.28	+1.3
146,721	-		PP_0138	0.39	+0.7
146,861	+		PP_0138	0.50	+1.3
146,861	+		PP_0138	0.50	+0.8
146,861	+		PP_0138	0.50	+1.1
146,862	-		PP_0138	0.50	+1.9
146,862	-				+1.3
146,862	-		PP_0138	0.50	+1.3
147,023	+		PP_0138	0.63	+0.4
147,023	+		PP_0138	0.63	+1.6
147,023	+		PP_0138	0.63	+1.1
147,023	+		PP_0138	0.63	+1.4
147,023	+		PP_0138	0.63	+2.0
147,023	+		PP_0138	0.63	+0.9
147,024	-		PP_0138	0.63	+1.5
147,024	-		PP_0138	0.63	+1.1
147,024	-		PP_0138	0.63	+0.8
147,024	-		PP_0138	0.63	+2.2
147,083	+		PP_0138	0.68	+0.2
147,083	+		PP_0138	0.68	+0.2
147,170	-		PP_0138	0.75	+0.7
147,170	-		PP_0138	0.75	+1.7
147,344	+		PP_0138	0.90	+0.6
147,344	+		PP_0138	0.90	+1.5
147,344	+		PP_0138	0.90	+1.4
147,344	+		PP_0138	0.90	+1.0
147,344	+		PP_0138	0.90	+0.7
147,344	+		PP_0138	0.90	+0.8
147,345	-		PP_0138	0.90	+1.1
147,345	-		PP_0138	0.90	+0.6
147,348	+		PP_0138	0.90	+0.1
147,348	+		PP_0138	0.90	+1.1
147,359	+				+0.8
147,455	+				+1.4
147,571	+		PP_0139	0.18	+0.5
147,571	+		PP_0139	0.18	+0.0
147,660	-		PP_0139	0.32	-0.1
147,734	+		PP_0139	0.44	-0.3
147,735	-		PP_0139	0.44	-0.2
147,735	-		PP_0139	0.44	-0.2
147,750	+		PP_0139	0.47	+0.1
147,750	+		PP_0139	0.47	+0.2
147,751	-		PP_0139	0.47	+0.1
147,751	-		PP_0139	0.47	-0.9
147,775	+				+0.3
147,857	+		PP_0139	0.63	-0.3
147,858	-		PP_0139	0.64	+0.1
148,126	+				-0.4
148,268	+		PP_0140	0.19	-0.5
148,269	-		PP_0140	0.19	-1.1
148,269	-		PP_0140	0.19	+0.8