Experiment: Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0061 and PP_0062 are separated by 83 nucleotides PP_0062 and PP_0063 are separated by 41 nucleotides
PP_0061: PP_0061 - glycine-tRNA ligase alpha subunit, at 71,901 to 72,848
_0061
PP_0062: PP_0062 - 3-methyl-adenine DNA glycosylase I, at 72,932 to 73,483
_0062
PP_0063: PP_0063 - putative Lipid A biosynthesis lauroyl acyltransferase, at 73,525 to 74,412
_0063
Position (kb) 72
73
74 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 72.893 kb on - strand at 72.893 kb on - strand at 72.893 kb on - strand at 72.895 kb on - strand at 72.917 kb on - strand at 72.932 kb on - strand at 72.932 kb on - strand at 72.969 kb on - strand at 73.073 kb on - strand, within PP_0062 at 73.073 kb on - strand, within PP_0062 at 73.112 kb on + strand, within PP_0062 at 73.112 kb on + strand, within PP_0062 at 73.113 kb on - strand, within PP_0062 at 73.113 kb on - strand, within PP_0062 at 73.113 kb on - strand, within PP_0062 at 73.113 kb on - strand, within PP_0062 at 73.128 kb on + strand, within PP_0062 at 73.406 kb on + strand, within PP_0062 at 73.406 kb on + strand, within PP_0062 at 73.407 kb on - strand, within PP_0062 at 73.489 kb on + strand at 73.489 kb on + strand at 73.490 kb on - strand at 73.490 kb on - strand at 73.490 kb on - strand at 73.512 kb on - strand at 73.662 kb on - strand, within PP_0063 at 73.746 kb on + strand at 73.747 kb on - strand, within PP_0063 at 73.858 kb on - strand, within PP_0063 at 73.915 kb on + strand, within PP_0063 at 73.915 kb on + strand, within PP_0063 at 73.915 kb on + strand, within PP_0063 at 73.915 kb on + strand, within PP_0063 at 73.916 kb on - strand, within PP_0063 at 74.082 kb on + strand, within PP_0063 at 74.195 kb on + strand, within PP_0063 at 74.196 kb on - strand, within PP_0063 at 74.275 kb on + strand, within PP_0063 at 74.275 kb on + strand, within PP_0063 at 74.275 kb on + strand, within PP_0063 at 74.276 kb on - strand, within PP_0063 at 74.276 kb on - strand, within PP_0063 at 74.276 kb on - strand, within PP_0063 at 74.276 kb on - strand, within PP_0063 at 74.276 kb on - strand, within PP_0063 at 74.329 kb on + strand at 74.330 kb on - strand at 74.330 kb on - strand at 74.330 kb on - strand at 74.330 kb on - strand at 74.341 kb on + strand at 74.353 kb on + strand at 74.353 kb on + strand at 74.354 kb on - strand at 74.354 kb on - strand at 74.354 kb on - strand at 74.410 kb on + strand at 74.410 kb on + strand at 74.411 kb on - strand at 74.411 kb on - strand at 74.411 kb on - strand at 74.411 kb on - strand at 74.411 kb on - strand at 74.411 kb on - strand at 74.431 kb on + strand at 74.431 kb on + strand at 74.431 kb on + strand at 74.431 kb on + strand at 74.431 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI tmk3mutant grown in Vogels_fungal_media, filtered; 0.2X remove 72,893 - -0.3 72,893 - -0.4 72,893 - -0.6 72,895 - -0.4 72,917 - -0.1 72,932 - -0.2 72,932 - -0.6 72,969 - -0.6 73,073 - PP_0062 0.26 -0.1 73,073 - PP_0062 0.26 -2.3 73,112 + PP_0062 0.33 +1.5 73,112 + PP_0062 0.33 -1.5 73,113 - PP_0062 0.33 +1.1 73,113 - PP_0062 0.33 -1.7 73,113 - PP_0062 0.33 +0.4 73,113 - PP_0062 0.33 +0.1 73,128 + PP_0062 0.36 -0.0 73,406 + PP_0062 0.86 +0.3 73,406 + PP_0062 0.86 +1.0 73,407 - PP_0062 0.86 +0.7 73,489 + -0.3 73,489 + +0.3 73,490 - -2.1 73,490 - -0.0 73,490 - -0.9 73,512 - -0.2 73,662 - PP_0063 0.15 -0.7 73,746 + -2.2 73,747 - PP_0063 0.25 -0.9 73,858 - PP_0063 0.38 -1.5 73,915 + PP_0063 0.44 -3.0 73,915 + PP_0063 0.44 -1.0 73,915 + PP_0063 0.44 +0.2 73,915 + PP_0063 0.44 -0.6 73,916 - PP_0063 0.44 -0.1 74,082 + PP_0063 0.63 +1.1 74,195 + PP_0063 0.75 +0.3 74,196 - PP_0063 0.76 -1.6 74,275 + PP_0063 0.84 -1.9 74,275 + PP_0063 0.84 -0.2 74,275 + PP_0063 0.84 -2.6 74,276 - PP_0063 0.85 -0.1 74,276 - PP_0063 0.85 +1.1 74,276 - PP_0063 0.85 +1.3 74,276 - PP_0063 0.85 +0.8 74,276 - PP_0063 0.85 -1.4 74,329 + -2.5 74,330 - -1.9 74,330 - -0.7 74,330 - -0.5 74,330 - -2.2 74,341 + -0.1 74,353 + -2.2 74,353 + -1.0 74,354 - -1.4 74,354 - -0.8 74,354 - -2.0 74,410 + +0.1 74,410 + -1.1 74,411 - -0.1 74,411 - +0.1 74,411 - +1.5 74,411 - -0.4 74,411 - +0.1 74,411 - -0.0 74,431 + +0.1 74,431 + -0.5 74,431 + -0.1 74,431 + +0.8 74,431 + -0.0
Or see this region's nucleotide sequence