Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0698 and PP_0699 are separated by 227 nucleotides PP_0699 and PP_t70 are separated by 130 nucleotides PP_t70 and PP_0700 are separated by 95 nucleotides
PP_0698: PP_0698 - Transcriptional regulator, LysR family, at 811,334 to 812,251
_0698
PP_0699: PP_0699 - Transporter, LysE family, at 812,479 to 813,093
_0699
PP_t70: PP_t70 - tRNA-Met, at 813,224 to 813,300
_t70
PP_0700: PP_0700 - putative Transmembrane sensor, at 813,396 to 814,382
_0700
Position (kb) 813
814 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 812.301 kb on - strand at 812.301 kb on - strand at 812.301 kb on - strand at 812.312 kb on + strand at 812.312 kb on + strand at 812.312 kb on + strand at 812.312 kb on + strand at 812.313 kb on - strand at 812.313 kb on - strand at 812.313 kb on - strand at 812.313 kb on - strand at 812.323 kb on - strand at 812.361 kb on + strand at 812.362 kb on - strand at 812.362 kb on - strand at 812.362 kb on - strand at 812.366 kb on - strand at 812.401 kb on - strand at 812.422 kb on + strand at 812.638 kb on + strand, within PP_0699 at 812.638 kb on + strand, within PP_0699 at 812.638 kb on + strand, within PP_0699 at 812.638 kb on + strand, within PP_0699 at 812.639 kb on - strand at 812.639 kb on - strand, within PP_0699 at 812.734 kb on + strand, within PP_0699 at 812.735 kb on - strand, within PP_0699 at 812.735 kb on - strand, within PP_0699 at 812.760 kb on + strand, within PP_0699 at 812.760 kb on + strand, within PP_0699 at 812.798 kb on + strand, within PP_0699 at 812.986 kb on - strand, within PP_0699 at 813.086 kb on + strand at 813.086 kb on + strand at 813.086 kb on + strand at 813.086 kb on + strand at 813.087 kb on - strand at 813.103 kb on - strand at 813.504 kb on + strand, within PP_0700 at 813.505 kb on - strand, within PP_0700 at 813.650 kb on + strand, within PP_0700 at 813.651 kb on - strand, within PP_0700 at 813.651 kb on - strand, within PP_0700 at 813.783 kb on + strand, within PP_0700 at 813.784 kb on - strand, within PP_0700 at 813.802 kb on + strand, within PP_0700 at 813.803 kb on - strand, within PP_0700 at 813.803 kb on - strand, within PP_0700 at 813.804 kb on + strand, within PP_0700 at 813.805 kb on - strand, within PP_0700 at 813.805 kb on - strand, within PP_0700 at 813.972 kb on + strand, within PP_0700 at 813.972 kb on + strand, within PP_0700 at 813.972 kb on + strand, within PP_0700 at 813.973 kb on - strand, within PP_0700 at 814.037 kb on - strand, within PP_0700 at 814.037 kb on - strand, within PP_0700 at 814.042 kb on + strand, within PP_0700 at 814.043 kb on - strand, within PP_0700 at 814.043 kb on - strand, within PP_0700 at 814.180 kb on + strand, within PP_0700 at 814.200 kb on + strand, within PP_0700 at 814.200 kb on + strand, within PP_0700 at 814.201 kb on - strand, within PP_0700 at 814.201 kb on - strand, within PP_0700
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 812,301 - -1.0 812,301 - +2.6 812,301 - +0.5 812,312 + -0.8 812,312 + +0.7 812,312 + -0.6 812,312 + -0.3 812,313 - +0.9 812,313 - -0.5 812,313 - +0.6 812,313 - +1.5 812,323 - +0.9 812,361 + -0.1 812,362 - +1.9 812,362 - -2.0 812,362 - -0.7 812,366 - -1.4 812,401 - +1.1 812,422 + -0.5 812,638 + PP_0699 0.26 +0.2 812,638 + PP_0699 0.26 -3.2 812,638 + PP_0699 0.26 -1.4 812,638 + PP_0699 0.26 +1.2 812,639 - -0.2 812,639 - PP_0699 0.26 -1.0 812,734 + PP_0699 0.41 +0.3 812,735 - PP_0699 0.42 +0.2 812,735 - PP_0699 0.42 -0.2 812,760 + PP_0699 0.46 -0.5 812,760 + PP_0699 0.46 -1.0 812,798 + PP_0699 0.52 -1.4 812,986 - PP_0699 0.82 +0.4 813,086 + -0.5 813,086 + +0.2 813,086 + -0.7 813,086 + +2.6 813,087 - -0.3 813,103 - +0.3 813,504 + PP_0700 0.11 -2.6 813,505 - PP_0700 0.11 -3.8 813,650 + PP_0700 0.26 +0.1 813,651 - PP_0700 0.26 +0.2 813,651 - PP_0700 0.26 -1.4 813,783 + PP_0700 0.39 -1.7 813,784 - PP_0700 0.39 -0.9 813,802 + PP_0700 0.41 -0.1 813,803 - PP_0700 0.41 +1.2 813,803 - PP_0700 0.41 -2.0 813,804 + PP_0700 0.41 -0.4 813,805 - PP_0700 0.41 +0.5 813,805 - PP_0700 0.41 -1.3 813,972 + PP_0700 0.58 +1.1 813,972 + PP_0700 0.58 -1.8 813,972 + PP_0700 0.58 -2.0 813,973 - PP_0700 0.58 -0.7 814,037 - PP_0700 0.65 +0.3 814,037 - PP_0700 0.65 -1.4 814,042 + PP_0700 0.65 +1.2 814,043 - PP_0700 0.66 -0.1 814,043 - PP_0700 0.66 -1.5 814,180 + PP_0700 0.79 -0.6 814,200 + PP_0700 0.81 -1.7 814,200 + PP_0700 0.81 -1.1 814,201 - PP_0700 0.82 +2.9 814,201 - PP_0700 0.82 +0.6
Or see this region's nucleotide sequence