Strain Fitness in Pseudomonas putida KT2440 around PP_t33

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
2,270,805	+		PP_2002	0.52	+0.6
2,270,806	-		PP_2002	0.52	-1.2
2,270,847	-		PP_2002	0.57	+1.5
2,270,884	-		PP_2002	0.62	+0.4
2,270,884	-		PP_2002	0.62	-0.1
2,271,171	+				-0.9
2,271,171	+				-0.7
2,271,171	+				-0.3
2,271,171	+				+0.4
2,271,171	+				+0.1
2,271,171	+				+0.1
2,271,171	+				-0.5
2,271,171	+				+1.3
2,271,172	-				+0.1
2,271,172	-				+0.8
2,271,172	-				+1.1
2,271,172	-				+0.1
2,271,172	-				+0.6
2,271,172	-				-0.6
2,271,172	-				-0.9
2,271,172	-				+0.5
2,271,173	+				+0.0
2,271,173	+				-1.6
2,271,174	-				-0.1
2,271,227	+				-1.3
2,271,228	-				-0.5
2,271,236	+				+0.6
2,271,249	+				-1.0
2,271,249	+				-2.3
2,271,250	-				+0.9
2,271,724	-		PP_t33	0.10	-2.0
2,271,811	+				+1.1
2,271,812	-				+1.0
2,271,812	-				+1.2
2,271,896	-				-3.5
2,271,896	-				+1.4
2,271,942	-		PP_t34	0.10	-0.5
2,272,179	+				-0.8
2,272,180	-				+0.0
2,272,180	-				+0.8
2,272,180	-				-0.1
2,272,328	-		PP_2003	0.25	+2.9
2,272,403	+		PP_2003	0.33	-0.1
2,272,403	+		PP_2003	0.33	-0.4
2,272,404	-		PP_2003	0.33	-0.9
2,272,694	+		PP_2003	0.64	+1.1
2,272,703	+		PP_2003	0.65	+0.6
2,272,704	-		PP_2003	0.65	+2.6
2,272,724	+		PP_2003	0.67	-0.3
2,272,724	+		PP_2003	0.67	+2.6
2,272,725	-		PP_2003	0.67	+1.1
2,272,725	-		PP_2003	0.67	+1.1