Strain Fitness in Pseudomonas putida KT2440 around PP_5461

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
1,016,511	-		PP_0876	0.28	-0.1
1,016,531	+		PP_0876	0.30	-0.1
1,016,579	+		PP_0876	0.36	+1.5
1,016,600	+		PP_0876	0.39	+1.2
1,016,720	+		PP_0876	0.53	+1.4
1,016,721	-		PP_0876	0.53	-0.4
1,016,721	-		PP_0876	0.53	+0.2
1,016,816	+		PP_0876	0.65	-0.7
1,016,816	+		PP_0876	0.65	+0.9
1,016,816	+		PP_0876	0.65	-0.2
1,016,903	-		PP_0876	0.75	+1.7
1,016,903	-		PP_0876	0.75	-0.2
1,016,906	+		PP_0876	0.76	-1.0
1,016,907	-		PP_0876	0.76	-0.3
1,016,907	-		PP_0876	0.76	+0.8
1,016,975	+		PP_0876	0.84	+0.8
1,016,975	+		PP_0876	0.84	+0.2
1,016,975	+		PP_0876	0.84	+0.0
1,016,976	-				+0.4
1,017,023	+				-0.1
1,017,098	+				-1.5
1,017,143	-				+1.9
1,017,143	-				-0.3
1,017,190	-				+0.5
1,017,190	-				+0.4
1,017,274	+				-0.8
1,017,329	+				-1.1
1,017,329	+				-0.1
1,017,371	-				-0.8
1,017,432	+		PP_5461	0.10	+0.1
1,017,433	-		PP_5461	0.11	+1.2
1,017,433	-		PP_5461	0.11	+0.5
1,017,489	+		PP_5461	0.22	+0.3
1,017,489	+		PP_5461	0.22	+0.4
1,017,491	+		PP_5461	0.23	+1.1
1,017,491	+		PP_5461	0.23	+3.6
1,017,492	-		PP_5461	0.23	-2.0
1,017,492	-		PP_5461	0.23	+0.1
1,017,527	+		PP_5461	0.30	+1.1
1,017,547	+		PP_5461	0.34	+0.4
1,017,551	+		PP_5461	0.35	+0.6
1,017,551	+		PP_5461	0.35	+0.1
1,017,551	+		PP_5461	0.35	+1.5
1,017,552	-		PP_5461	0.35	+0.3
1,017,563	+		PP_5461	0.38	+1.1
1,017,563	+		PP_5461	0.38	+1.2
1,017,564	-		PP_5461	0.38	-1.2
1,017,575	-		PP_5461	0.40	-0.8
1,017,584	-		PP_5461	0.42	-1.7
1,017,584	-		PP_5461	0.42	+1.3
1,017,605	+		PP_5461	0.46	+1.0
1,017,605	+		PP_5461	0.46	+1.4
1,017,605	+				+2.6
1,017,605	+		PP_5461	0.46	-1.1
1,017,605	+		PP_5461	0.46	+0.5
1,017,605	+		PP_5461	0.46	-0.5
1,017,605	+		PP_5461	0.46	-1.1
1,017,606	-		PP_5461	0.47	-0.6
1,017,606	-		PP_5461	0.47	+0.4
1,017,606	-		PP_5461	0.47	+0.1
1,017,606	-		PP_5461	0.47	-1.6
1,017,635	-		PP_5461	0.53	-1.0
1,017,635	-		PP_5461	0.53	+1.2
1,017,658	-		PP_5461	0.57	+1.5
1,017,676	-		PP_5461	0.61	+1.0
1,017,708	+		PP_5461	0.68	-1.8
1,017,765	-		PP_5461	0.80	+0.8
1,017,894	-				+0.9
1,017,897	+				+1.6
1,017,902	+				+0.3
1,017,902	+				-0.6
1,017,903	-				-1.3
1,018,086	+				+0.2
1,018,087	-				+1.9
1,018,094	-				-1.2
1,018,094	-				-1.3
1,018,112	-				-1.3
1,018,133	+				-1.3
1,018,134	-				+0.2
1,018,183	+				-0.9
1,018,251	-		PP_0878	0.16	-0.3
1,018,315	+		PP_0878	0.23	-1.8
1,018,316	-		PP_0878	0.23	+0.1
1,018,316	-		PP_0878	0.23	-0.2
1,018,316	-		PP_0878	0.23	+1.0
1,018,316	-		PP_0878	0.23	+0.8
1,018,336	+		PP_0878	0.25	-0.6
1,018,336	+		PP_0878	0.25	-3.6
1,018,336	+		PP_0878	0.25	-0.9
1,018,337	-		PP_0878	0.25	-1.8
1,018,379	-		PP_0878	0.30	+1.6
1,018,379	-		PP_0878	0.30	+0.4
1,018,390	-		PP_0878	0.31	-0.9
1,018,390	-		PP_0878	0.31	-1.5
1,018,442	-		PP_0878	0.36	-1.4
1,018,621	+		PP_0878	0.55	-0.3
1,018,622	-		PP_0878	0.55	-1.1