Strain Fitness in Pseudomonas putida KT2440 around PP_5319

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
6,064,545	+				-2.0
6,064,546	-				-0.1
6,064,561	+				-0.9
6,064,562	-				+0.8
6,064,670	+		PP_5319	0.18	-1.4
6,064,670	+		PP_5319	0.18	-0.3
6,064,671	-		PP_5319	0.19	-0.7
6,064,671	-		PP_5319	0.19	-1.1
6,064,671	-		PP_5319	0.19	+1.3
6,064,672	+		PP_5319	0.19	+0.2
6,064,672	+		PP_5319	0.19	-0.4
6,064,673	-		PP_5319	0.19	-0.5
6,064,673	-		PP_5319	0.19	-0.8
6,064,673	-		PP_5319	0.19	-2.5
6,064,723	-		PP_5319	0.31	-1.5
6,064,736	+		PP_5319	0.34	+0.5
6,064,737	-		PP_5319	0.35	+1.0
6,064,737	-		PP_5319	0.35	-0.7
6,064,840	+		PP_5319	0.59	-1.4
6,064,840	+		PP_5319	0.59	-1.8
6,064,840	+		PP_5319	0.59	-1.2
6,064,841	-		PP_5319	0.59	+0.3
6,064,841	-		PP_5319	0.59	+1.3
6,064,952	+		PP_5319	0.86	-0.1
6,064,952	+		PP_5319	0.86	+0.1
6,064,952	+		PP_5319	0.86	-1.2
6,064,952	+		PP_5319	0.86	-1.0
6,064,953	-		PP_5319	0.86	-0.4
6,064,953	-		PP_5319	0.86	-1.7
6,064,953	-		PP_5319	0.86	-2.3
6,064,953	-		PP_5319	0.86	-0.3
6,064,953	-		PP_5319	0.86	+0.6
6,065,025	+				-1.8
6,065,026	-				+0.9
6,065,031	-				+2.8
6,065,031	-				-0.1
6,065,031	-				+0.2
6,065,031	-				-2.3
6,065,031	-				+1.6
6,065,086	-				+0.2
6,065,098	+				+0.2
6,065,098	+				+0.4
6,065,098	+				-0.2
6,065,098	+				-0.9
6,065,098	+				-1.6
6,065,098	+				-0.2
6,065,098	+				-0.1
6,065,098	+				+2.8
6,065,099	-				-0.7
6,065,099	-				-1.0
6,065,099	-				-1.5
6,065,144	-				+0.6
6,065,445	+		PP_5320	0.47	-0.6
6,065,445	+		PP_5320	0.47	+0.5
6,065,445	+		PP_5320	0.47	+1.3
6,065,446	-		PP_5320	0.47	-0.0
6,065,619	+		PP_5320	0.71	+0.7
6,065,661	+		PP_5320	0.77	+2.4
6,065,662	-		PP_5320	0.77	+0.7
6,065,706	+		PP_5320	0.83	+0.4
6,065,706	+		PP_5320	0.83	-1.7
6,065,706	+		PP_5320	0.83	-0.2
6,065,707	-		PP_5320	0.83	+0.5
6,065,707	-		PP_5320	0.83	-1.3
6,065,707	-		PP_5320	0.83	-0.3
6,065,707	-		PP_5320	0.83	-0.7
6,065,707	-		PP_5320	0.83	-0.6
6,065,720	+		PP_5320	0.85	-1.1
6,065,720	+		PP_5320	0.85	-1.9
6,065,782	+				+0.7
6,065,862	+				+1.1
6,065,863	-				-0.2
6,065,863	-				-0.9
6,065,928	-				+0.5
6,065,962	-				-0.1
6,065,964	+				-0.5
6,065,965	-				-0.7
6,065,965	-				-2.9
6,065,965	-				+1.8
6,065,997	+				+0.4