Strain Fitness in Pseudomonas putida KT2440 around PP_5304

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
6,051,241	+				+0.5
6,051,241	+				-0.8
6,051,241	+				+1.5
6,051,241	+				-2.8
6,051,242	-				-1.4
6,051,242	-				+2.4
6,051,245	+				+0.4
6,051,245	+				-0.5
6,051,245	+				-1.8
6,051,245	+				-0.6
6,051,246	-				-0.5
6,051,246	-				-0.3
6,051,322	+		PP_5303	0.13	+1.2
6,051,322	+		PP_5303	0.13	-1.6
6,051,322	+		PP_5303	0.13	-2.2
6,051,323	-		PP_5303	0.14	-0.5
6,051,355	+		PP_5303	0.22	+1.1
6,051,355	+		PP_5303	0.22	-1.1
6,051,355	+		PP_5303	0.22	+3.6
6,051,355	+		PP_5303	0.22	+0.5
6,051,355	+		PP_5303	0.22	+0.8
6,051,355	+		PP_5303	0.22	-2.3
6,051,356	-		PP_5303	0.22	+0.2
6,051,534	-				+0.2
6,051,569	-		PP_5303	0.78	+0.4
6,051,746	-				+1.2
6,051,746	-				+0.2
6,051,746	-				-1.1
6,051,746	-				-2.1
6,051,905	+		PP_5304	0.27	+0.2
6,051,905	+		PP_5304	0.27	+1.2
6,051,906	-		PP_5304	0.27	+0.5
6,051,906	-		PP_5304	0.27	+0.6
6,051,909	+		PP_5304	0.27	-0.5
6,051,909	+		PP_5304	0.27	-0.3
6,051,909	+		PP_5304	0.27	+0.6
6,051,909	+		PP_5304	0.27	+1.5
6,051,909	+		PP_5304	0.27	+0.8
6,051,909	+		PP_5304	0.27	-1.7
6,051,909	+		PP_5304	0.27	-1.9
6,051,909	+		PP_5304	0.27	+0.0
6,051,909	+		PP_5304	0.27	+1.1
6,051,909	+		PP_5304	0.27	-0.3
6,051,910	-		PP_5304	0.28	+0.8
6,051,910	-		PP_5304	0.28	-0.1
6,051,910	-		PP_5304	0.28	+1.8
6,051,910	-		PP_5304	0.28	+2.0
6,051,910	-		PP_5304	0.28	-1.7
6,051,911	+		PP_5304	0.28	-2.6
6,051,912	-		PP_5304	0.28	+3.9
6,051,912	-		PP_5304	0.28	-0.1
6,051,912	-		PP_5304	0.28	+0.4
6,051,912	-		PP_5304	0.28	+0.9
6,051,912	-		PP_5304	0.28	-2.5
6,052,122	+		PP_5304	0.57	-1.2
6,052,131	+		PP_5304	0.58	+0.6
6,052,132	-		PP_5304	0.58	-0.2
6,052,132	-		PP_5304	0.58	+1.5
6,052,142	+		PP_5304	0.59	+0.7
6,052,143	-		PP_5304	0.59	+1.5
6,052,143	-		PP_5304	0.59	+0.5
6,052,459	-				+0.8
6,052,459	-				+1.8
6,052,565	+				-0.7
6,052,577	+				+0.6
6,052,577	+				-1.2
6,052,578	-				+0.1
6,052,578	-				+0.4
6,052,578	-				+2.3
6,052,578	-				+1.4
6,052,578	-				+1.0
6,052,578	-				+1.8
6,052,578	-				-0.3
6,052,610	+				+1.2
6,052,610	+				+1.3
6,052,611	-				-0.8
6,052,637	+				+0.8
6,052,650	-				+1.5
6,052,659	-				+1.3
6,052,660	+				+0.7
6,052,660	+				+0.7
6,052,660	+				-0.3
6,052,661	-				+1.0
6,052,661	-				+1.3
6,052,710	+		PP_5305	0.12	-0.9
6,052,760	+		PP_5305	0.18	-2.0
6,052,760	+		PP_5305	0.18	-0.0
6,052,760	+		PP_5305	0.18	+2.3
6,052,761	-		PP_5305	0.18	+0.3
6,052,761	-		PP_5305	0.18	+0.2
6,052,820	+		PP_5305	0.25	+0.9
6,052,820	+		PP_5305	0.25	+1.4
6,052,820	+		PP_5305	0.25	+0.3
6,052,821	-		PP_5305	0.25	+0.2
6,052,821	-		PP_5305	0.25	+0.2
6,052,821	-		PP_5305	0.25	-1.4
6,052,821	-		PP_5305	0.25	+0.9
6,052,821	-		PP_5305	0.25	+1.4
6,052,911	-		PP_5305	0.35	+0.9
6,052,911	-		PP_5305	0.35	-0.3
6,052,982	+		PP_5305	0.43	+0.1
6,052,982	+		PP_5305	0.43	+1.0
6,052,982	+		PP_5305	0.43	+1.4
6,052,982	+		PP_5305	0.43	-1.3
6,052,982	+		PP_5305	0.43	+1.6
6,052,983	-		PP_5305	0.44	+1.2
6,052,983	-		PP_5305	0.44	+1.4
6,052,983	-		PP_5305	0.44	+2.6
6,052,986	+		PP_5305	0.44	-1.0
6,052,987	-		PP_5305	0.44	-0.7
6,052,987	-		PP_5305	0.44	+1.5
6,053,066	+		PP_5305	0.53	+1.0
6,053,123	+		PP_5305	0.60	-0.2
6,053,123	+		PP_5305	0.60	+0.9
6,053,213	+				-0.7
6,053,213	+		PP_5305	0.70	+1.3
6,053,213	+		PP_5305	0.70	+2.3
6,053,214	-		PP_5305	0.71	+1.0
6,053,214	-		PP_5305	0.71	+0.8
6,053,214	-		PP_5305	0.71	+1.5
6,053,214	-		PP_5305	0.71	+2.1
6,053,262	-		PP_5305	0.76	-0.8
6,053,270	+		PP_5305	0.77	+0.0
6,053,270	+		PP_5305	0.77	+2.5
6,053,271	-		PP_5305	0.77	+2.1