Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5104 and PP_5105 are separated by 54 nucleotides PP_5105 and PP_5106 are separated by 24 nucleotides PP_5106 and PP_5107 are separated by 64 nucleotides PP_5107 and PP_5108 are separated by 198 nucleotides
PP_5104: PP_5104 - thiazole synthase, at 5,825,482 to 5,826,294
_5104
PP_5105: PP_5105 - Sulfur carrier protein ThiS, at 5,826,349 to 5,826,627
_5105
PP_5106: PP_5106 - conserved inner membrane protein, at 5,826,652 to 5,827,023
_5106
PP_5107: PP_5107 - Monofunctional biosynthetic peptidoglycan transglycosylase, at 5,827,088 to 5,827,798
_5107
PP_5108: PP_5108 - RNA polymerase factor sigma-32, at 5,827,997 to 5,828,851
_5108
Position (kb) 5826
5827
5828 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5825.716 kb on + strand, within PP_5104 at 5825.750 kb on + strand, within PP_5104 at 5825.750 kb on + strand, within PP_5104 at 5825.750 kb on + strand, within PP_5104 at 5825.858 kb on + strand, within PP_5104 at 5825.858 kb on + strand, within PP_5104 at 5826.077 kb on + strand, within PP_5104 at 5826.077 kb on + strand, within PP_5104 at 5826.077 kb on + strand, within PP_5104 at 5826.077 kb on + strand, within PP_5104 at 5826.078 kb on - strand, within PP_5104 at 5826.078 kb on - strand, within PP_5104 at 5826.094 kb on + strand, within PP_5104 at 5826.094 kb on + strand, within PP_5104 at 5826.094 kb on + strand, within PP_5104 at 5826.095 kb on - strand, within PP_5104 at 5826.095 kb on - strand, within PP_5104 at 5826.212 kb on + strand, within PP_5104 at 5826.212 kb on + strand, within PP_5104 at 5826.212 kb on + strand, within PP_5104 at 5826.213 kb on - strand at 5826.213 kb on - strand at 5826.628 kb on + strand at 5826.764 kb on + strand, within PP_5106 at 5826.765 kb on - strand, within PP_5106 at 5826.890 kb on + strand, within PP_5106 at 5826.891 kb on - strand, within PP_5106 at 5826.891 kb on - strand, within PP_5106 at 5826.891 kb on - strand at 5827.038 kb on + strand at 5827.049 kb on + strand at 5827.049 kb on + strand at 5827.049 kb on + strand at 5827.049 kb on + strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.050 kb on - strand at 5827.051 kb on + strand at 5827.051 kb on + strand at 5827.052 kb on - strand at 5827.052 kb on - strand at 5827.103 kb on - strand at 5827.215 kb on + strand, within PP_5107 at 5827.541 kb on + strand, within PP_5107 at 5827.541 kb on + strand, within PP_5107 at 5827.541 kb on + strand, within PP_5107 at 5827.542 kb on - strand, within PP_5107 at 5827.542 kb on - strand, within PP_5107 at 5827.542 kb on - strand, within PP_5107 at 5827.703 kb on + strand, within PP_5107 at 5827.703 kb on + strand, within PP_5107 at 5827.836 kb on - strand at 5827.901 kb on + strand at 5827.902 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X remove 5,825,716 + PP_5104 0.29 -0.2 5,825,750 + PP_5104 0.33 +0.5 5,825,750 + PP_5104 0.33 -0.3 5,825,750 + PP_5104 0.33 +0.6 5,825,858 + PP_5104 0.46 -1.1 5,825,858 + PP_5104 0.46 +1.9 5,826,077 + PP_5104 0.73 -0.8 5,826,077 + PP_5104 0.73 -0.3 5,826,077 + PP_5104 0.73 -0.2 5,826,077 + PP_5104 0.73 +2.4 5,826,078 - PP_5104 0.73 -0.4 5,826,078 - PP_5104 0.73 -1.1 5,826,094 + PP_5104 0.75 -1.3 5,826,094 + PP_5104 0.75 -1.4 5,826,094 + PP_5104 0.75 -0.4 5,826,095 - PP_5104 0.75 -0.7 5,826,095 - PP_5104 0.75 -0.8 5,826,212 + PP_5104 0.90 -1.8 5,826,212 + PP_5104 0.90 +2.4 5,826,212 + PP_5104 0.90 +0.2 5,826,213 - +1.2 5,826,213 - +0.7 5,826,628 + -0.0 5,826,764 + PP_5106 0.30 -1.0 5,826,765 - PP_5106 0.30 +0.2 5,826,890 + PP_5106 0.64 -1.4 5,826,891 - PP_5106 0.64 +0.4 5,826,891 - PP_5106 0.64 +0.1 5,826,891 - -0.0 5,827,038 + +1.5 5,827,049 + +0.8 5,827,049 + +1.7 5,827,049 + -1.7 5,827,049 + +0.4 5,827,050 - +0.8 5,827,050 - -1.5 5,827,050 - -0.2 5,827,050 - -1.3 5,827,050 - -1.4 5,827,051 + -1.5 5,827,051 + -0.0 5,827,052 - -1.1 5,827,052 - +1.3 5,827,103 - +0.5 5,827,215 + PP_5107 0.18 -0.9 5,827,541 + PP_5107 0.64 -0.4 5,827,541 + PP_5107 0.64 +0.5 5,827,541 + PP_5107 0.64 +0.9 5,827,542 - PP_5107 0.64 +0.3 5,827,542 - PP_5107 0.64 +0.3 5,827,542 - PP_5107 0.64 +0.0 5,827,703 + PP_5107 0.86 -0.3 5,827,703 + PP_5107 0.86 +0.6 5,827,836 - -0.2 5,827,901 + +0.5 5,827,902 - +0.8
Or see this region's nucleotide sequence