Strain Fitness in Pseudomonas putida KT2440 around PP_5068

Experiment: Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Supernatant; Trichoderma atroviride IMI dcr22mutant grown in Vogels_fungal_media, filtered; 0.8X
5,784,080	+		PP_5067	0.77	-0.1
5,784,081	-		PP_5067	0.77	+0.3
5,784,145	+		PP_5067	0.79	-3.4
5,784,146	-		PP_5067	0.79	-2.4
5,784,146	-		PP_5067	0.79	-3.6
5,784,505	+				-1.2
5,784,595	+				-0.3
5,784,595	+				-1.3
5,784,596	-				-1.2
5,784,694	+				+1.4
5,784,694	+				+1.4
5,784,721	-				-0.8
5,784,721	-				+2.2
5,784,847	-				+1.3
5,784,851	+				-0.7
5,784,852	-				-0.4
5,784,852	-				+1.3
5,784,852	-				+0.0
5,784,852	-				+2.1
5,784,852	-				+0.3
5,784,852	-				-0.7
5,785,225	+		PP_5068	0.16	+1.3
5,785,226	-		PP_5068	0.16	+1.5
5,785,250	-		PP_5068	0.17	+0.6
5,785,354	+		PP_5068	0.24	+0.8
5,785,354	+		PP_5068	0.24	-0.7
5,785,355	-		PP_5068	0.25	+0.6
5,785,463	+		PP_5068	0.32	+0.3
5,785,561	+		PP_5068	0.39	-2.4
5,785,562	-		PP_5068	0.39	+3.9
5,785,567	+		PP_5068	0.39	+0.0
5,785,567	+		PP_5068	0.39	+1.1
5,785,568	-		PP_5068	0.39	+0.4
5,785,568	-		PP_5068	0.39	+1.0
5,785,571	-		PP_5068	0.39	-0.5
5,785,571	-		PP_5068	0.39	+1.0
5,785,571	-		PP_5068	0.39	-1.5
5,785,627	+		PP_5068	0.43	+2.7
5,785,720	+		PP_5068	0.49	+1.4
5,785,720	+		PP_5068	0.49	-0.2
5,785,721	-		PP_5068	0.50	+0.4
5,785,721	-		PP_5068	0.50	+0.2
5,785,721	-		PP_5068	0.50	+1.0
5,785,721	-		PP_5068	0.50	-0.2
5,785,793	-		PP_5068	0.54	+0.6
5,785,793	-		PP_5068	0.54	-2.3
5,785,975	+		PP_5068	0.67	-1.1
5,785,987	+		PP_5068	0.68	+1.3
5,785,987	+		PP_5068	0.68	+1.0
5,785,987	+		PP_5068	0.68	+1.5
5,785,988	-		PP_5068	0.68	+1.1
5,786,092	+		PP_5068	0.75	-0.6
5,786,092	+		PP_5068	0.75	-0.4
5,786,093	-		PP_5068	0.75	+0.4
5,786,200	+		PP_5068	0.82	-2.0
5,786,200	+		PP_5068	0.82	-0.4
5,786,275	+		PP_5068	0.87	+0.8
5,786,333	-				-0.7
5,786,333	-				-0.1
5,786,401	+				+0.9
5,786,401	+				-0.1
5,786,604	+				+0.2
5,786,605	-				+0.9
5,786,732	+		PP_5069	0.33	+0.1
5,786,733	-		PP_5069	0.33	-0.5
5,786,888	-		PP_5069	0.69	+0.5
5,786,910	+		PP_5069	0.74	+0.1
5,786,910	+		PP_5069	0.74	+1.0
5,786,910	+		PP_5069	0.74	+1.5
5,786,911	-		PP_5069	0.74	-0.2
5,786,911	-		PP_5069	0.74	-0.1
5,786,911	-		PP_5069	0.74	-0.1
5,786,911	-		PP_5069	0.74	-2.0
5,786,911	-		PP_5069	0.74	+0.5
5,786,911	-		PP_5069	0.74	-0.0
5,787,021	-				-0.4
5,787,146	+		PP_5070	0.16	+1.1
5,787,146	+		PP_5070	0.16	+1.7
5,787,146	+		PP_5070	0.16	-0.4
5,787,147	-		PP_5070	0.17	-0.2
5,787,415	-		PP_5070	0.51	-2.3
5,787,415	-		PP_5070	0.51	+2.0
5,787,422	+		PP_5070	0.52	+1.1
5,787,422	+		PP_5070	0.52	+1.5